Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 784 / 0 Protein kinase superfamily protein (.1.2) AT5G13160 606 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 546 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 509 / 5e-179 Protein kinase superfamily protein (.1.2) AT3G20530 489 / 1e-171 Protein kinase superfamily protein (.1) AT3G07070 485 / 1e-169 Protein kinase superfamily protein (.1) AT2G28590 478 / 1e-166 Protein kinase superfamily protein (.1) AT3G24790 470 / 3e-164 Protein kinase superfamily protein (.1) AT4G13190 466 / 3e-162 Protein kinase superfamily protein (.1) AT1G20650 462 / 5e-161 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G021500 [exp] 950 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 670 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 664 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 596 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 591 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 557 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 511 / 3e-180 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 507 / 3e-178 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 498 / 3e-175 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033966 [exp] 832 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 831 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 644 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 572 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 572 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 571 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 569 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 510 / 6e-180 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 511 / 3e-179 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 487 / 4e-170 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G205700.3 pacid=42808111 polypeptide=Potri.008G205700.3.p locus=Potri.008G205700 ID=Potri.008G205700.3.v4.1 annot-version=v4.1 ATGGGTGGGTGTTTTCCTTGTTTTGGCTCATCAAACAAGGAGGGTAGTAGCGGTGGTGGTGTTGTTAAAGAGGTTAAAAAGAAGGATTCAGCTAAAGAAG GTTCAGTTGGTCAGTCTCAGCATGTTGGCAGAGTTAATTCAGACAAATCAAAGTCCCGGAGTGGTTCTGATCAAAAGAAGGAACCATCAATTCCCAAAGA TGGGCCAACAGCTAACATTGCAGCACAGACATTTACATTCCGAGAATTAGCCACTGCCACAAAGAACTTTAAACCAGAGTGCTTGTTAGGTGAGGGGGGT TTTGGGCGTGTTTACAAAGGTCGCTTGGAAAGCACTGGCCAGGCAGTTGCTGTCAAACAGCTTGACCGAAATGGCCTTCAAGGAAATAGAGAGTTTCTGG TGGAGGTTCTCATGCTCAGCCTCTTACACCATCCAAACCTTGTCAATTTGATTGGCTACTGTGCTGATGGGGACCAACGCCTCCTTGTTTATGAGTTTAT GCCATTGGGATCTTTGGAGGACCATTTACATGATCTCCCCCCGGACAAGGAGCCTTTGGACTGGAACACGAGGATGAAGATTGCAGCTGGTGCAGCTAAG GGATTGGAATACTTGCATGATAAAGCAAACCCTCCTGTCATATACCGCGACTTAAAATCATCCAACATCCTTCTTGATGAGGGTTTCCACCCCAAGTTGT CAGATTTTGGACTAGCAAAGCTAGGTCCTGTTGGTGACAAGACTCATGTCTCAACACGTGTGATGGGGACATATGGTTATTGTGCGCCAGAATATGCCAT GACTGGCCAGCTTACTCTAAAGTCTGATGTCTATAGTTTTGGGGTTGTCTTTCTTGAACTTATCACAGGGCGCAAGGCAATTGATAATACTCGGGCTCCT GGAGAACATAATCTTGTTGCATGGGCACGACCTCTTTTCAAAGACCGTAGGAAATTCCCAAAAATGGCTGACCCGCTGCTACAAGGTTGTTATCCAATGC GAGGATTGTATCAAGCTCTTGCAGTTGCAGCTATGTGTTTACAAGAGCAAGCTGCTACAAGGCCTCTAATAGGCGATGTTGTGACTGCTCTCACATATTT AGCTTCCCAAACATATGACCCAAATGCCGCCAGTCAAAGTAACAGAGTTGGGCCATCTACTCCTAGGAACAGAGATGAGCGGAGGGGAATGGCAGATGGG CTGGATAGCCCAGATGAGCATGGACTTGGTGGGCGACGTGACTCCCCTTCCACATATAAAAATTCACCTGATTATAGAAAACGGGATCGTGTTAGGGAAT TCAGCACTGGTGCAGAGTTAGGAAGGAGTGAAGCCGGCAGTGGATCTGGCAGAAAATGGGGTTTGGATGATTCAGAGCGACAGGATTCTCAGAAAGATAG TCTTGTGACTACCAGCAGAGCAAGGGAAACTCCAAGAAATCGTGATTTAGATAGAGAACGAGCAGTTGCAGCGGCAAAAGTATGGGGTGAAAATTGGAGA GAGAAAAAGCGGGCGAATGCAATGGGTAGTTTCGATGGTACAAATGAGTGA
AA sequence Show only first row Show all	>Potri.008G205700.3 pacid=42808111 polypeptide=Potri.008G205700.3.p locus=Potri.008G205700 ID=Potri.008G205700.3.v4.1 annot-version=v4.1 MGGCFPCFGSSNKEGSSGGGVVKEVKKKDSAKEGSVGQSQHVGRVNSDKSKSRSGSDQKKEPSIPKDGPTANIAAQTFTFRELATATKNFKPECLLGEGG FGRVYKGRLESTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAK GLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAP GEHNLVAWARPLFKDRRKFPKMADPLLQGCYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAASQSNRVGPSTPRNRDERRGMADG LDSPDEHGLGGRRDSPSTYKNSPDYRKRDRVREFSTGAELGRSEAGSGSGRKWGLDDSERQDSQKDSLVTTSRARETPRNRDLDRERAVAAAKVWGENWR EKKRANAMGSFDGTNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18610			Protein kinase superfamily pro...		Potri.008G205700 [exp]	0	1
AT1G03080			kinase interacting (KIP1-like)...		Potri.005G213400 [exp]	13.74	0.6981
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.019G104400 [exp]	23.74	0.6360
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.011G126800 [exp]	32.98	0.7324
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	50.73	0.6846
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.010G247900 [exp]	53.32	0.7043
AT1G03350			BSD domain-containing protein ...		Potri.010G028801 [exp]	58.32	0.7028
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.010G204900 [exp]	61.44	0.6946
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	72.86	0.6438
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	103.88	0.6131
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Potri.006G005300 [exp]	108.30	0.6168

Compare expression of checked genes

Potri.008G205700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.