Plant FIBer expression Database

Potri.008G205900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48960 912 / 0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
AT1G75210 224 / 9e-65 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
AT2G23890 155 / 2e-40 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G002900
[exp]
1102 / 0 AT5G48960 902 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Potri.014G196700
[exp]
215 / 1e-61 AT1G75210 869 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Potri.018G100600
[exp]
147 / 1e-37 AT2G23890 871 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032712
[exp]
222 / 3e-64 AT1G75210 900 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Lus10019962
[exp]
163 / 6e-42 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Lus10015485
[exp]
130 / 3e-31 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF05761 5_nucleotid 5' nucleotidase family
Representative CDS sequence
>Potri.008G205900.1 pacid=42808655 polypeptide=Potri.008G205900.1.p locus=Potri.008G205900 ID=Potri.008G205900.1.v4.1 annot-version=v4.1
ATGTTTATGACGGCGGAGGTTTTGGGAAAATTCTTCTTGCTGCAAAAAGACACCCTCTGTGGCTTTCCAATGGCTGCTGCGGCAACCACTAATTCTCTTC
TTTTTGTCAGACCAAGACCCATGTTTGCAAATAACATTAAAAGATCTCAGATGATGATGGCGTGCTGTTGTAGTGTTGGAGAACAAGTCTTCTCAGTCAC
ACCCTCTAATAATTACGAGGTTGATTATTTAGGACAGAGCACTAAAGGGGATTTGAATCTTAACTTTGACCATCTTGACGCCGTTGGAATTGATGGTCCA
GCAACTTTACAAGGTCCAATTGAGGAGGTTGCTAGAAAAAAGGCTGAAGAAGCTGAGAATTTGCTTAATGACTTGGGCATTTCGAGTCCCTCGTCAGCAA
GGAATTCATCCCGCGGCATATTTTGCAGTCGTACTTTAAATCTTAGGTCAATTAGTGCCATTGGATATGACATGGACTACACTTTGATACATTACAATGT
GAAGGCCTGGGAAGGACGGGCTTATGATTATTGCATGGGAAATTTACAAAGCATAGGTTTCCCAGTTGATGGACTTGCATTTGATCCAGACTTGGTAATT
AGAGGTCTTGTTATAGACAAAGAGAAAGGCAACCTAGTTAAAGCAGATCGGTTTGGTTATGTAAAAAGGGCAATGCATGGCACCAGAATGTTGTCTACTC
AAGATGTTAGTGAGATGTATGGGAGGGAACTGGTTGATCTGCGGAAGGAAAATCGATGGGAGTTCTTAAACACACTGTTCTCTGTCTCGGAAGCTGTGGC
TTACATGCAGATGGTTGATAGATATGATGAAGGAGCTATATCAGCTGAAATATGTCCACCTGACTATAAAGGACTTTACAAGGCTGTTGGAAAGGCTTTA
TTTCGGGCACATGTTGAGGGTCAGCTTAAGAGTGAGATCATGTCAAATCCTGAATTGTTTGTGGAGCCTGATCCAGAATTACCTTTAGCGCTGTTAGATC
AAAAGGAGGCTGGTAAAAAGCTTCTACTCATTACAAACTCTGATTATCATTACACGGACAAAATGATGAAGCATTCGTTTAACAGATTCCTACCAAATGA
TATGGGCTGGCGAGATCTGTTTGACATGGTGATAATATCTGCAAGAAAGCCAGAATTCTTTCAAATGTCACACCCATTGTATGAGGTGGTGACAGGTGAG
GGTTTAATGCGTCCATGCTTCAAAGCTCGTAAAGGTGGATTGTACTCAGGTGGGAGTGCTCAGATGGTTGAAAACTCCCTAGATATCCATGGGGATGAAA
TATTATATGTTGGTGATCATATATACACTGATGTGAGTCAATCTAAAGTCCATCAACTATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGTA
CAGTGCTCTGATTCATAGTAGGGATCATCGGGCCACACTGATTGAGCTTATTAATCAAAAGGAGGTGGTGGGGGATCTCTTTAATCAACTTCGGCTAGCT
CTGCAAAGGAGAAATACAGGGCGTCCTGCTCAAACCCTTGCTGCAACTAACATGGATGATCAAGAACTCACAGAAAGCATGCAAAAGCTATTGATTGTTA
TGCAAAGACTGGATGAGAAAATTGCTCCAATGCTAGAAGCAGATGGAGAGCTTTTCAGCGAAAGGTGGGGATTTCTTTCTCGTGCAGGTCTGTGGGATAA
AAGCCACTTAATGAGACAAATAGAGAAGTATGCTGATATATATACCTCGAGGGTCTCAAATTTCCTGCACTATACCCCATTCATGTACTTCCGTTCACAA
GAGCAGACGCTAGCTCATGATTCATATTCGCACTACCAGGCACAGATCAATGGGTCTGCTGTTGACTCAACCGGTGCTAATTAA
AA sequence
>Potri.008G205900.1 pacid=42808655 polypeptide=Potri.008G205900.1.p locus=Potri.008G205900 ID=Potri.008G205900.1.v4.1 annot-version=v4.1
MFMTAEVLGKFFLLQKDTLCGFPMAAAATTNSLLFVRPRPMFANNIKRSQMMMACCCSVGEQVFSVTPSNNYEVDYLGQSTKGDLNLNFDHLDAVGIDGP
ATLQGPIEEVARKKAEEAENLLNDLGISSPSSARNSSRGIFCSRTLNLRSISAIGYDMDYTLIHYNVKAWEGRAYDYCMGNLQSIGFPVDGLAFDPDLVI
RGLVIDKEKGNLVKADRFGYVKRAMHGTRMLSTQDVSEMYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRYDEGAISAEICPPDYKGLYKAVGKAL
FRAHVEGQLKSEIMSNPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMKHSFNRFLPNDMGWRDLFDMVIISARKPEFFQMSHPLYEVVTGE
GLMRPCFKARKGGLYSGGSAQMVENSLDIHGDEILYVGDHIYTDVSQSKVHQLWRTALICRELEEEYSALIHSRDHRATLIELINQKEVVGDLFNQLRLA
LQRRNTGRPAQTLAATNMDDQELTESMQKLLIVMQRLDEKIAPMLEADGELFSERWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQ
EQTLAHDSYSHYQAQINGSAVDSTGAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48960 HAD-superfamily hydrolase, sub... Potri.008G205900
[exp]
0 1
AT3G46640 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, H... Potri.009G035000
[exp]
2.00 0.8772
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.002G207200
[exp]
3.87 0.8737
AT3G49140 Pentatricopeptide repeat (PPR)... Potri.017G148600
[exp]
4.00 0.8768
AT4G10180 FUS2, DET1, ATD... FUSCA 2, DE-ETIOLATED 1, light... Potri.013G161700
[exp]
4.47 0.8718 Pt-DET1.1
AT2G20180 bHLH PIF1, PIL5, bHL... PHY-INTERACTING FACTOR 1, phyt... Potri.002G252800
[exp]
9.21 0.8537 Pt-PIL5.1
Potri.005G201350
[exp]
10.19 0.8304
AT1G23180 ARM repeat superfamily protein... Potri.010G110200
[exp]
11.22 0.8454
AT5G24060 Pentatricopeptide repeat (PPR)... Potri.004G072400
[exp]
11.40 0.8368
AT5G03570 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THA... Potri.016G128500
[exp]
12.32 0.7934
AT1G79790 AtcpFHy1 flavin mononucleotide hydrolas... Potri.010G143000
[exp]
16.70 0.8001

Potri.008G205900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.