Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GCR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48270 477 / 5e-171 GCR1 G-protein-coupled receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018333 [exp] 391 / 6e-137 AT1G48270 389 / 6e-136 G-protein-coupled receptor 1 (.1) Lus10017120 [exp] 363 / 6e-123 AT1G48270 367 / 3e-124 G-protein-coupled receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF05462 [poplar] [flax] Dicty_CAR Slime mold cyclic AMP receptor
Representative CDS sequence Show only first row Show all	>Potri.008G206000.2 pacid=42805975 polypeptide=Potri.008G206000.2.p locus=Potri.008G206000 ID=Potri.008G206000.2.v4.1 annot-version=v4.1 ATGGCGATGATAGGGAACCTGACGGCTCACCAGCGTTGGATTCTGATGGCGGTGAAAGGAGGAGCGTCAAGTCTGTCATTCTTAGGGTCGAGCTTCATCG TTCTCTGTTATCTCCTCTTCAAAGAACTCCGCAAGTTCTCCTTCAAGCTCGTCTTTTACCTCGCCCTCTCCGATATGCTTTGCAGTTTCTTCAGCATTGT TGGGGATCCATCAAAAGGATTCTTCTGTTATGCACAAGGATACAGTACACATTTCTTTTGTGTAGCATCTTTTCTTTGGACTACGACAATTGCCTTTACA CTTCATCGCACTGTTGTTAAACACAAGACAGATGTTGAAGATCTTGAGGCCATGTTTCACTTATATGTTTGGGGAACTTCATTGTTTCTGACTGTAATAC GCTCCATTGGTAATGACCACAGGCATTTAGGTGCATGGTGTTTGACACCAACAGGGAGAACAAGAAAGGCAGTTCAATTCATTACATTTTATGCGCCACT ATGGGGTGCAATTCTTTACAATGGATTTACGTATTATCAAGTCATACGCATGCTAAACAATGCAACACGAATGGCAGTAGGAATGTCAGACCGAGCATAT CAATCTGATGCAAGGGCAGACAAGAAGGCAATGAACCGGTGGGGATACTATCCACTCATCTTAATAGGATCATGGGCTTTTGGCACTATCAACGGCATTC ATGATTTTATAGAACCAGGCCACAAAATCTTTTGGCTCTCTGTTCTTGATGTTGGGACAGCTGCACTTATGGGTCTTTCCAACTCAATAGCATATGGCCT GAACTCTTCTGTGCGGCGGGCAATATATGAAAGATTGGATCAGGTTTGGCCAGAGAGTCTTCGGAGATGGTTCCCTGGCAGTTTAAAATCTAGAGGTCAA TTTCAAGAGAGCGAACTAGTCTCATTGAGGATTGAAGATCAGCATTAA
AA sequence Show only first row Show all	>Potri.008G206000.2 pacid=42805975 polypeptide=Potri.008G206000.2.p locus=Potri.008G206000 ID=Potri.008G206000.2.v4.1 annot-version=v4.1 MAMIGNLTAHQRWILMAVKGGASSLSFLGSSFIVLCYLLFKELRKFSFKLVFYLALSDMLCSFFSIVGDPSKGFFCYAQGYSTHFFCVASFLWTTTIAFT LHRTVVKHKTDVEDLEAMFHLYVWGTSLFLTVIRSIGNDHRHLGAWCLTPTGRTRKAVQFITFYAPLWGAILYNGFTYYQVIRMLNNATRMAVGMSDRAY QSDARADKKAMNRWGYYPLILIGSWAFGTINGIHDFIEPGHKIFWLSVLDVGTAALMGLSNSIAYGLNSSVRRAIYERLDQVWPESLRRWFPGSLKSRGQ FQESELVSLRIEDQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	0	1	GCR1.1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	5.47	0.7943
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	6.00	0.7891
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	14.45	0.8234
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.009G039100 [exp]	20.39	0.8093
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.013G049900 [exp]	20.68	0.8223
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	20.78	0.7448
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.003G145700 [exp]	25.80	0.8150
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.011G051700 [exp]	31.41	0.7742
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	35.63	0.8091	GAPDH.2
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	39.77	0.7419

Compare expression of checked genes

Potri.008G206000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.