Plant FIBer expression Database

Potri.008G206200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1)
AT1G34150 76 / 5e-15 Pseudouridine synthase family protein (.1)
AT1G09800 72 / 7e-14 Pseudouridine synthase family protein (.1)
AT5G35400 66 / 7e-12 Pseudouridine synthase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G061650
[exp]
92 / 1e-20 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
Potri.003G008500
[exp]
74 / 1e-14 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1)
Potri.018G147400
[exp]
66 / 6e-12 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039480
[exp]
402 / 3e-140 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Lus10023799
[exp]
92 / 8e-21 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1)
Lus10037366
[exp]
92 / 1e-20 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1)
Lus10035791
[exp]
86 / 1e-18 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1)
Lus10022949
[exp]
63 / 1e-10 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2)
Lus10027594
[exp]
62 / 3e-10 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF01416 PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence
>Potri.008G206200.1 pacid=42806976 polypeptide=Potri.008G206200.1.p locus=Potri.008G206200 ID=Potri.008G206200.1.v4.1 annot-version=v4.1
ATGACATGTTATGGTGGGGTTGCAGCAGCGGCAGCCCTTCCTTCTCTTCCACCTACAACTCTGACTACGCTTCCTTCTTCATCCAGTAACACCTCTGTAA
GAGTAAGAGATGTGGGCAGTGGTGGCGCAGAACATCCTAATACGGTATTGAAGCCAACCGTTGATGGGTTTAAGTGGCGCTTACTTATATCTTATGATGG
CACTCACTATAAAGGCTGGCAATTTCAGCAAACCCCTCCAACTATACAGTGCATTCTAGAAAAAGCTTTAACTCGAGCTACAAAGCTTGAAAGGAAGGAT
CTTCATTTAGTTGGTGCCAGTAGGACAGATGGAGGAGTGCATGCCTGGGGTCAGGTGGCACACTTTGTTACACCTTTCAATTATGACAGCTTGGATAGCA
TTCATGCAGCTCTCAATGGTCTTCTTCCTCCTGACATTCGTGTTAGAGAAATTAGTGCTGTAGTTCCTGAGTTCCATGCTCGATTTTCTGCCAAGGGAAA
GACTTATCACTACAAGATATTTAATGATACTGTCATGGATCCATTTCAGCGTCTGTATGCATACCATGTTACTCATAAACTCAATGCTGCTGTAATGAGA
GAAGCAGCAAATCATTTTATTGGAACCCGCGATTTCTCTGCTTTTGTCAATTCATCACGCAATGATGGAGTGCCAAATCCAGTGAAGACTATTTTTCGAT
TTGATATCATCAAAATGGGAGCTCTCCTACAGCTAGAAGTTGAAGGCTCCGGTTTCATGTATAGACAAGTGCGGAACATGGTTGCTTTGCTGCTCCAAAT
TGGCAAGGAAGCAATTTCTCCTGATATTGTCCCAAAGATTTTAGCTACTCGTGATCGCAAGGAGCTCGCTAAATATACCTTGGCTGCCCCACCTCACGGA
CTCTGTCTTGTAGCTGTTAAGTATAATGAAGAGCACCTACAACTTCCGTTAGTTTGCCCTACAACCAGTCTTGGTAGGCATCACAGCATAAGCAAGTGTA
AGGTTCCATTTTATTAA
AA sequence
>Potri.008G206200.1 pacid=42806976 polypeptide=Potri.008G206200.1.p locus=Potri.008G206200 ID=Potri.008G206200.1.v4.1 annot-version=v4.1
MTCYGGVAAAAALPSLPPTTLTTLPSSSSNTSVRVRDVGSGGAEHPNTVLKPTVDGFKWRLLISYDGTHYKGWQFQQTPPTIQCILEKALTRATKLERKD
LHLVGASRTDGGVHAWGQVAHFVTPFNYDSLDSIHAALNGLLPPDIRVREISAVVPEFHARFSAKGKTYHYKIFNDTVMDPFQRLYAYHVTHKLNAAVMR
EAANHFIGTRDFSAFVNSSRNDGVPNPVKTIFRFDIIKMGALLQLEVEGSGFMYRQVRNMVALLLQIGKEAISPDIVPKILATRDRKELAKYTLAAPPHG
LCLVAVKYNEEHLQLPLVCPTTSLGRHHSISKCKVPFY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06950 Pseudouridine synthase family ... Potri.008G206200
[exp]
0 1
AT1G69200 FLN2 fructokinase-like 2 (.1) Potri.008G097300
[exp]
2.44 0.9754
AT3G06430 AtPPR2, EMB2750 pentatricopeptide repeat 2, em... Potri.010G153900
[exp]
3.46 0.9694
AT2G39670 Radical SAM superfamily protei... Potri.008G056500
[exp]
6.48 0.9614
AT3G06430 AtPPR2, EMB2750 pentatricopeptide repeat 2, em... Potri.008G098700
[exp]
8.00 0.9558
AT5G13410 FKBP-like peptidyl-prolyl cis-... Potri.001G068300
[exp]
8.60 0.9701
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Potri.002G169300
[exp]
8.94 0.9671
AT1G49975 unknown protein Potri.009G086400
[exp]
9.79 0.9648
AT3G26630 Tetratricopeptide repeat (TPR)... Potri.002G220600
[exp]
10.39 0.9639
AT3G52155 Phosphoglycerate mutase family... Potri.006G000600
[exp]
11.18 0.9581
AT1G67660 Restriction endonuclease, type... Potri.010G054800
[exp]
12.04 0.9671

Potri.008G206200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.