Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17465 478 / 1e-171 RPL3P ribosomal protein L3 plastid (.1) AT2G43030 153 / 9e-45 Ribosomal protein L3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002300 [exp] 599 / 0 AT3G17465 484 / 8e-174 ribosomal protein L3 plastid (.1) Potri.013G070100 [exp] 162 / 8e-48 AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033666 [exp] 474 / 7e-170 AT3G17465 455 / 2e-162 ribosomal protein L3 plastid (.1) Lus10017709 [exp] 465 / 3e-166 AT3G17465 450 / 2e-160 ribosomal protein L3 plastid (.1) Lus10001337 [exp] 150 / 2e-43 AT2G43030 365 / 2e-128 Ribosomal protein L3 family protein (.1) Lus10013640 [exp] 150 / 3e-43 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [poplar] [flax] EFTPs PF00297 [poplar] [flax] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Potri.008G207000.1 pacid=42806055 polypeptide=Potri.008G207000.1.p locus=Potri.008G207000 ID=Potri.008G207000.1.v4.1 annot-version=v4.1 ATGTCGGCCTTATCGAGAGGCCTCATTTCTCGTCTCTATCGGATACTGTCAGCCAATTCAAGAACACCTCCAACAGCAACAACAAAGTTCTACCTCTTAA GATGTTTCAGCGCTGATGCTCTGATCGATGGGTCCCAGGTTGAGTACCATCAACAAAGCCGGATCATTGAAGCAAAACCGGGTGTAATGACCCCAAATTC AAAGCGAACAGGAGTCGTTGCGGTTAAATGTGGAATGACTGCTCTTTGGGATAAATGGGGTGCTAGGATTCCTATTACTGTCTTATGGGTCGATGATAAT ATTGTCTCTCAAGTTAAAACTGTTGAAAAAGAAGGCTTCTTTGCTTTGCAGGTTGCTTGCGGGCAGAAGAAAGAGAAGCATTTGACGAAGCCGGAAGTGG GTCATTTTAGAGCTCAAGGTGTCCCCATGAAGAGGAAATTAAGGGAGTTTCCTGTTACAGAAGATGCTCTTCTTCCTGTTGGTACTTATGTTGGCGTTCG ACATTTTGTTCCTGGTCAATTTGTTGATGTCGCTGGAATCACTATGGGTAAAGGTTTTCAGGGTGGTATGAAAAGGCATGGATTTAAAGGAGGGCCAGCA AGTCACGGTGCATCCTTATCGCATCGAAGCATTGGTTCTACTGGTCAGAGGGATGCTCCTGGGAAGGTATTTAAAGGCAAAAAGATGCCTGGGCGCATGG GTGGAGTTCAGAGAACGGTTAAAAATGTTTGGGTCTACAAAATAGATCCTGCAAGGAACCTGATGTGGGTGAAAGGCCAAGTCCCTGGAGCTGAAGGGAA CTTTGTGTTCATAAAAGATTCTGTTTACAAGAAACCTGATATTCAGATGCTTCCATTCCCAACTTACTTTGGTGCAGAAGATGATGATAATGCAGAACCT CTAGTTGCTGATCTTGGAGAAGTGGATCCGTTTATGGTTGCAGATTAG
AA sequence Show only first row Show all	>Potri.008G207000.1 pacid=42806055 polypeptide=Potri.008G207000.1.p locus=Potri.008G207000 ID=Potri.008G207000.1.v4.1 annot-version=v4.1 MSALSRGLISRLYRILSANSRTPPTATTKFYLLRCFSADALIDGSQVEYHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDN IVSQVKTVEKEGFFALQVACGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPA SHGASLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGVQRTVKNVWVYKIDPARNLMWVKGQVPGAEGNFVFIKDSVYKKPDIQMLPFPTYFGAEDDDNAEP LVADLGEVDPFMVAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.008G207000 [exp]	0	1	RPL3.2
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Potri.019G014396 [exp]	2.00	0.8918
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.002G202800 [exp]	2.82	0.8894	RPL18.9
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.002G149500 [exp]	4.47	0.8392	Pt-DHDPS2.1
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	5.09	0.8294
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	6.92	0.8159
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Potri.009G158700 [exp]	8.24	0.8572	Pt-RPL30.2
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	10.39	0.8624	RPS13.4
AT1G76010			Alba DNA/RNA-binding protein (...		Potri.002G017600 [exp]	15.77	0.7819
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	15.87	0.8044
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	23.34	0.7704	Pt-FUT1.2

Compare expression of checked genes

Potri.008G207000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.