Plant FIBer expression Database

Potri.008G207200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00270 435 / 5e-155 ATCG00270.1, PSBD photosystem II reaction center protein D (.1)
ATCG00020 68 / 7e-13 ATCG00020.1, PSBA photosystem II reaction center protein A (.1)
AT2G07738 48 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G142201
[exp]
269 / 6e-91 ATCG00270 410 / 1e-145 photosystem II reaction center protein D (.1)
Potri.019G047540
[exp]
64 / 1e-13 ATCG00270 105 / 2e-29 photosystem II reaction center protein D (.1)
Potri.005G154836
[exp]
68 / 5e-13 ATCG00020 603 / 0.0 photosystem II reaction center protein A (.1)
Potri.013G138300
[exp]
68 / 7e-13 ATCG00020 684 / 0.0 photosystem II reaction center protein A (.1)
Potri.013G142760
[exp]
59 / 1e-09 ATCG00280 853 / 0.0 photosystem II reaction center protein C (.1)
Potri.019G047480
[exp]
0 / 1 ATCG00280 140 / 2e-40 photosystem II reaction center protein C (.1)
Potri.010G032700
[exp]
0 / 1 ATCG00280 164 / 1e-49 photosystem II reaction center protein C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004895
[exp]
68 / 9e-13 ATCG00020 713 / 0.0 photosystem II reaction center protein A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00124 Photo_RC Photosynthetic reaction centre protein
Representative CDS sequence
>Potri.008G207200.2 pacid=42806311 polypeptide=Potri.008G207200.2.p locus=Potri.008G207200 ID=Potri.008G207200.2.v4.1 annot-version=v4.1
ATGACTGACTGGTTACGAAGGGACCGTTTTGTTTTTGTGGATCGGTCCGGTCTTTTGCTCTTTCCTTGTGCTTATTTTGCCTTAGGGGGTTGGTTCACAG
GTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCATTCTCTACTCCTCCTAATAA
AACACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCAGACTAATAGGTTTTATTTTACGTCAA
TTTGAACTTGCTCGATCCGTGCAATTACGACCTTATAATACAATCACATTCTCTGCTCCAATTGCGGTTTTTGTTTATGTATTCCTGATTTATCCATTAG
GTCAGTTTGGTTGGCTCTTTACGCCTAGATTTCATAATTGGACACTGAACGCATTTCATATGATGGGAGTTGTCAGTGTATTGGGCGTTGCTTTATTATG
CGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTCAAGATGGTGATGGTGCAAATACATTCTGTAACCGGTTTATGGTGAGTGCTCTTGAAGTAGTT
GGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTGTTT
TAAATGAAGGCATTCATGCTTGGATGGCGGCTCAAGACCAGCCTCATGAAAACCTTATACTCCTTGAGGAGGTTCTACCTCGTGGAAACGCTCTTTAA
AA sequence
>Potri.008G207200.2 pacid=42806311 polypeptide=Potri.008G207200.2.p locus=Potri.008G207200 ID=Potri.008G207200.2.v4.1 annot-version=v4.1
MTDWLRRDRFVFVDRSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAFSTPPNKTQGDFTRWCQLGGLWTFVALHGAFRLIGFILRQ
FELARSVQLRPYNTITFSAPIAVFVYVFLIYPLGQFGWLFTPRFHNWTLNAFHMMGVVSVLGVALLCAIHGATVENTLFQDGDGANTFCNRFMVSALEVV
GLALNLRAYDFVSQEIRATEDPEFETFYTKNIVLNEGIHAWMAAQDQPHENLILLEEVLPRGNAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00270 ATCG00270.1, PS... photosystem II reaction center... Potri.008G207200
[exp]
0 1
ATCG00270 ATCG00270.1, PS... photosystem II reaction center... Potri.019G047540
[exp]
1.41 0.9452
ATCG00480 ATCG00480.1, AT... ATP synthase subunit beta (.1) Potri.013G162800
[exp]
3.60 0.9455
ATCG00530 ATCG00530.1, YC... CemA-like proton extrusion pro... Potri.013G162300
[exp]
5.47 0.9432
ATCG00520 ATCG00520.1, YC... unfolded protein binding (.1) Potri.013G162400
[exp]
6.92 0.9430
ATCG00580 ATCG00580.1, PS... photosystem II reaction center... Potri.013G161900
[exp]
7.34 0.9372
ATCG00570 ATCG00570.1, PS... photosystem II reaction center... Potri.013G162000
[exp]
9.16 0.9343
ATCG00520 ATCG00520.1, YC... unfolded protein binding (.1) Potri.016G094067
[exp]
15.00 0.9243
ATCG00280 ATCG00280.1, PS... photosystem II reaction center... Potri.013G142760
[exp]
15.29 0.9037
ATCG00510 ATCG00510.1, PS... photsystem I subunit I (.1) Potri.013G162500
[exp]
17.43 0.9066
ATCG00530 ATCG00530.1, YC... CemA-like proton extrusion pro... Potri.016G094100
[exp]
18.38 0.9124

Potri.008G207200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.