Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02500 773 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 762 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 548 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 536 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 513 / 5e-180 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 295 / 2e-95 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 289 / 2e-93 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 106 / 2e-27 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025300 [exp] 886 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 705 / 0 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.012G068300 [exp] 548 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 546 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 298 / 2e-96 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 291 / 5e-94 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 63 / 3e-12 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037519 [exp] 818 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 814 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 813 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 638 / 0 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10019076 [exp] 541 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 538 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 537 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 535 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 446 / 5e-158 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 311 / 2e-101 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF05637 [poplar] [flax] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Potri.008G208000.1 pacid=42806068 polypeptide=Potri.008G208000.1.p locus=Potri.008G208000 ID=Potri.008G208000.1.v4.1 annot-version=v4.1 ATGCTGGACCGGTGCCTCGGGACTCATCGAGTCCGCCAGATCCAAAGAGCAACCCGCCACGGAAAAATCACACTTCTTTGCCTCTTCATGACCGTAGTCG TCCTACGTGGCACAATCGGCGCCGGCAAGTCCGGTACGCCAGAACAAGACTTCAACGACCTCAGAAACCACATCTACGCCTCTCGCAAACACGCTGAGCC ACACCGAGTCCTCACCGAGTCGAATCAGTCCAACAACAACAAGAACGACGAAGGGAGTAATGCAAATGATGCGAATAATTATGCCGCATTTGACATCAAC AAGATCTTGGTCGATGAAGGAGAGGACGAGAAACCGGATCCGAATAAACCGTACTTTCTGGGTCCGAAAATATCAGATTGGGATGAACAGCGGGCGAAAT GGTTGAGTGAAAACCCTAATTTTAGCAATTTTATCGGGGCAAACAAACCGCGTGTTTTGTTAGTAACTGGATCTTCGCCGAAGCCGTGTGAGAATCCGGT AGGGGATCATTACTTGTTAAAATCTATAAAAAATAAGATTGATTATTGCAGGCTTCATGGAATTGAGATATTTTATAATATGGCATTGCTGGATGCGGAA ATGGCAGGGTTTTGGGCGAAATTGCCTTTGATTAGGAAGCTATTGATTTCGCACCCGGAGATTGAGTTTTTGTGGTGGATGGATAGTGATGCTATGTTTA CGGATATGGCTTTCGAGGTGCCGTGGGAGAGGTATAAGGATTCGAATTTTGTCATGCACGGATGGAATGAAATGGTTTATGATCAAAAGAATTGGATTGG ATTGAATACTGGGAGTTTTTTGCTGAGGAATTGTCAATGGTCGTTGGATCTTTTGGATGCGTGGTCACCAATGGGGCCAAAAGGGAAGATTAGAGATGAA GCAGGGAAGGTGCTTACCAGGGAACTCAAGAATAGGCCGGTTTTCGAAGCGGATGATCAGTCTGCGATGGTTTATTTATTGGCTACACAAAGGGATAAGT GGGGTGATAAGGTGTATTTAGAGAATGCTTATTATTTGCATGGTTATTGGGGGATTTTGGTTGATAGGTATGAGGAAATGATTGAGAATTATCACCCAGG TCTTGGTGATCATCGTTGGCCGCTTGTTACTCACTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGAGATTATTCAGTGGAGAGGTGTTTGAAGCAGATG GATCGCGCATTTAATTTTGGGGATAATCAAATTTTGCAGATTTATGGATTTACTCATAAATCGCTGGCTAGTCGGAGAGTTAAGAGAGTGAGAAATGAGA CAGGCAATCCACTTGAAGCGAAGGATGAGCTTGGCTTGCTTCACCCTGCATTTAAAGCTGTCAAGGTATCAGCATCTTGA
AA sequence Show only first row Show all	>Potri.008G208000.1 pacid=42806068 polypeptide=Potri.008G208000.1.p locus=Potri.008G208000 ID=Potri.008G208000.1.v4.1 annot-version=v4.1 MLDRCLGTHRVRQIQRATRHGKITLLCLFMTVVVLRGTIGAGKSGTPEQDFNDLRNHIYASRKHAEPHRVLTESNQSNNNKNDEGSNANDANNYAAFDIN KILVDEGEDEKPDPNKPYFLGPKISDWDEQRAKWLSENPNFSNFIGANKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLDAE MAGFWAKLPLIRKLLISHPEIEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDQKNWIGLNTGSFLLRNCQWSLDLLDAWSPMGPKGKIRDE AGKVLTRELKNRPVFEADDQSAMVYLLATQRDKWGDKVYLENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLKQM DRAFNFGDNQILQIYGFTHKSLASRRVKRVRNETGNPLEAKDELGLLHPAFKAVKVSAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	0	1
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	6.70	0.9224
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.004G204400 [exp]	8.00	0.8862	SLY1.1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	9.89	0.9238
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.006G122300 [exp]	10.72	0.8895
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.001G263700 [exp]	11.48	0.9136
AT4G01400			unknown protein		Potri.002G179600 [exp]	14.38	0.9076
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	15.29	0.9230
AT3G45230			hydroxyproline-rich glycoprote...		Potri.004G210300 [exp]	15.42	0.9094
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	17.43	0.9229	Pt-FLA11.2
AT5G25530			DNAJ heat shock family protein...		Potri.018G034600 [exp]	21.90	0.8821

Compare expression of checked genes

Potri.008G208000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.