Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27650 149 / 7e-42 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 142 / 3e-39 Tudor/PWWP/MBT superfamily protein (.1) AT5G02950 67 / 4e-13 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 56 / 4e-09 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G27860 52 / 6e-08 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 50 / 2e-07 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018700 [exp] 174 / 2e-50 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 168 / 2e-48 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.004G130600 [exp] 58 / 4e-10 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 51 / 1e-07 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 50 / 3e-07 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.016G085500 [exp] 49 / 5e-07 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 45 / 9e-06 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031498 [exp] 152 / 6e-43 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 147 / 4e-41 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 56 / 2e-09 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 55 / 5e-09 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10032141 [exp] 53 / 3e-08 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 52 / 7e-08 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10023486 [exp] 50 / 2e-07 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10040367 [exp] 50 / 2e-07 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.008G209900.1 pacid=42808248 polypeptide=Potri.008G209900.1.p locus=Potri.008G209900 ID=Potri.008G209900.1.v4.1 annot-version=v4.1 ATGTCGTGCATGTGTGAAACAAAGAGAGAGGGTCATGTCCTGGTTGCTTTTTTTGGAGATGGTAGCTATGGGTGGCTTGATCCGACGGAACTTGTTCAAT TTGATTCTCATTATGTTGAGAAATCAAAGCAAACAAATGCGAAGGTCTTCCTGATCAAGGCTGTTGAAGAGGCAGATGATGATATCAGAAGGAGGGCTGC GTATGGTTTGTTGTGTCCATGTAGGAGTCTCTATAGTTTTAGGCCAATGCATGTTGATGGGGTCCTTCAAGTTGATATATGTGGGTACGAGGCTGGGGGT CTGTACACTGTTGAACAAATTAGGAGCGCCAGAGCTGCATTTCAGTCAGTCGAGATGCTTGACTTTAAGCAGATGGCATTGATGCCATGTATGAATTTTA AAAGGAGAGTTCCTTGGATCAAGAATGTAGCTACACTTCTTGCTTACCGGAGAGAAGTCTTTGAGGAGCATGACGAGACCCACTTCAAGGCCCTTGCATG GATTGCGAACTGCATTCCCTGCCAATTCAAGGGCGGTCTTGGCACGGAGGGTTAA
AA sequence Show only first row Show all	>Potri.008G209900.1 pacid=42808248 polypeptide=Potri.008G209900.1.p locus=Potri.008G209900 ID=Potri.008G209900.1.v4.1 annot-version=v4.1 MSCMCETKREGHVLVAFFGDGSYGWLDPTELVQFDSHYVEKSKQTNAKVFLIKAVEEADDDIRRRAAYGLLCPCRSLYSFRPMHVDGVLQVDICGYEAGG LYTVEQIRSARAAFQSVEMLDFKQMALMPCMNFKRRVPWIKNVATLLAYRREVFEEHDETHFKALAWIANCIPCQFKGGLGTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.008G209900 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	2.82	0.7743
AT5G44360			FAD-binding Berberine family p...		Potri.011G161800 [exp]	9.74	0.7463
AT4G19950			unknown protein		Potri.005G184600 [exp]	15.81	0.6888
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	18.33	0.7613
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.002G133632 [exp]	26.72	0.7105
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	30.65	0.7504
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	34.89	0.7322
AT1G73110			P-loop containing nucleoside t...		Potri.003G187601 [exp]	38.57	0.7209
					Potri.005G134850 [exp]	41.18	0.7309
					Potri.005G152000 [exp]	48.40	0.7263

Compare expression of checked genes

Potri.008G209900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.