Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48970 519 / 0 Mitochondrial substrate carrier family protein (.1) AT3G21390 475 / 9e-170 Mitochondrial substrate carrier family protein (.1) AT4G01100 150 / 2e-42 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G55640 142 / 2e-39 Mitochondrial substrate carrier family protein (.1) AT2G37890 137 / 2e-37 Mitochondrial substrate carrier family protein (.1) AT3G53940 133 / 8e-36 Mitochondrial substrate carrier family protein (.1) AT1G14560 131 / 2e-35 Mitochondrial substrate carrier family protein (.1) AT3G51870 131 / 8e-35 Mitochondrial substrate carrier family protein (.1) AT4G26180 126 / 2e-33 Mitochondrial substrate carrier family protein (.1) AT5G01500 127 / 4e-33 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G024100 [exp] 565 / 0 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 152 / 6e-43 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 149 / 8e-42 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 147 / 5e-41 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 145 / 2e-40 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 143 / 1e-39 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 137 / 1e-37 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 137 / 2e-37 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 135 / 1e-35 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006521 [exp] 495 / 1e-177 AT5G48970 527 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10037508 [exp] 459 / 4e-163 AT5G48970 463 / 7e-165 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 151 / 1e-42 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 149 / 7e-42 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 145 / 2e-40 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 140 / 2e-38 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10022597 [exp] 133 / 9e-36 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 132 / 3e-35 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 129 / 2e-34 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 128 / 4e-34 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.008G210000.6 pacid=42806164 polypeptide=Potri.008G210000.6.p locus=Potri.008G210000 ID=Potri.008G210000.6.v4.1 annot-version=v4.1 ATGAGAATGGAGGGGGAGGGGGAGGAGGCTGCAACAGAAGCACCAGGGCAGCTAAAAAGGGCGTTAATAGATGCAACTGCCGGTGCTATTGCTGGTGGTA TTTCGCGTACCGTTACATCTCCTCTTGATGTCATCAAAATCAGATTCCAGGTTCAACTGGAGCCGACATATTCATGGGATTTGGTTCGCAGGAATATGAC TGCACCGTCAAAGTACACAGGAATGTTGCAAGCTACAAAGGATATATTTAGAGAGGAAGGTTTACCCGGCTTTTGGCGTGGCAATGTTCCAGCTTTGCTC ATGGTTATGCCATACACCGCCATACAATTTGCGGTGTTGCACAAATTAAAAACATTTGCTGCTGGTTCTTCTAAGACAGAGGATCATATCCATTTGAGTC CTTACCTCTCCTACATCAGCGGAGCATTAGCAGGGTGCACAGCTACAGTTGGATCATACCCATTTGATCTTCTAAGAACCATATTAGCATCACAGGGTGA ACCTAAGGTGTATCCAACAATGAGGTCAGCATTTGTTGATATTACCAGAACACGTGGCTTCAGAGGATTATATGCTGGATTATCTCCAACACTGGTTGAG ATTGTTCCTTATGCTGGCCTTCAGTTTGGCACCTATGATACATTTAAGCGCTGGACCATGGGTTGGAACCATGATAGATCATCTACCACAAGCTTCATAA GTACAGATGATAGCCTTTCCAGCTTTCAGCTTTTTGTCTGTGGGTTAGCGGCTGGCACTTGTGCCAAACTTGTCTGTCATCCTCTTGATGTGGTCAAGAA AAGGTTTCAGATCGAAGGATTACAGAGGCACCCAAGGTATGGTGCTCGAGTTGAGCATCATGCTTACAAAAACATGTTTGATGCTCTTAGCCGAATTTTG CAGATGGAGGGCTGGGCTGGTCTTTATAAAGGCATCGTCCCATCAACTGTCAAGGCTGCACCAGCTGGTGCTGTTACATTTTTAGCTTATGAATTTACAT CGGACTGGCTGGAGTCAATTTCAACTTGA
AA sequence Show only first row Show all	>Potri.008G210000.6 pacid=42806164 polypeptide=Potri.008G210000.6.p locus=Potri.008G210000 ID=Potri.008G210000.6.v4.1 annot-version=v4.1 MRMEGEGEEAATEAPGQLKRALIDATAGAIAGGISRTVTSPLDVIKIRFQVQLEPTYSWDLVRRNMTAPSKYTGMLQATKDIFREEGLPGFWRGNVPALL MVMPYTAIQFAVLHKLKTFAAGSSKTEDHIHLSPYLSYISGALAGCTATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDITRTRGFRGLYAGLSPTLVE IVPYAGLQFGTYDTFKRWTMGWNHDRSSTTSFISTDDSLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHHAYKNMFDALSRIL QMEGWAGLYKGIVPSTVKAAPAGAVTFLAYEFTSDWLESIST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48970			Mitochondrial substrate carrie...		Potri.008G210000 [exp]	0	1
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.014G130000 [exp]	3.31	0.7251	Pt-EID1.2
AT1G43860			sequence-specific DNA binding ...		Potri.002G073200 [exp]	4.89	0.7582
AT5G62960			unknown protein		Potri.015G078200 [exp]	8.83	0.7402
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	11.48	0.6870
AT5G27870			Plant invertase/pectin methyle...		Potri.010G010464 [exp]	13.89	0.7988
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.005G152500 [exp]	24.67	0.6962
AT5G26180			S-adenosyl-L-methionine-depend...		Potri.006G224000 [exp]	28.24	0.7663
AT1G16770			unknown protein		Potri.014G003300 [exp]	28.89	0.7559
AT1G76440			HSP20-like chaperones superfam...		Potri.001G243100 [exp]	41.70	0.6742
AT3G28370			unknown protein		Potri.017G074100 [exp]	47.18	0.7202

Compare expression of checked genes

Potri.008G210000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.