Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47820 375 / 5e-117 unknown protein AT1G09040 355 / 1e-108 unknown protein AT1G09050 347 / 3e-105 unknown protein AT1G55050 317 / 2e-94 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023900 [exp] 1357 / 0 AT2G47820 381 / 2e-119 unknown protein Potri.005G027300 [exp] 432 / 2e-137 AT1G09040 386 / 1e-119 unknown protein Potri.013G019300 [exp] 428 / 9e-136 AT1G09040 384 / 1e-118 unknown protein Potri.010G220000 [exp] 44 / 0.0008 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.008G041900 [exp] 44 / 0.001 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037506 [exp] 583 / 0 AT1G09050 359 / 7e-112 unknown protein Lus10006519 [exp] 578 / 0 AT1G09040 350 / 1e-108 unknown protein Lus10004495 [exp] 375 / 2e-113 AT1G09050 376 / 1e-113 unknown protein Lus10029906 [exp] 373 / 8e-113 AT1G09040 385 / 6e-117 unknown protein Lus10013816 [exp] 44 / 0.001 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G210200.6 pacid=42807604 polypeptide=Potri.008G210200.6.p locus=Potri.008G210200 ID=Potri.008G210200.6.v4.1 annot-version=v4.1 ATGGAGATGGATGTTATCAAAGGGAATTCTGAGTGGAATTGCATTGAAGATGAATCTGCTGAGCAATTGCTTTCTCCAGGTATTTGTGAGGCCTACAGAG ATCCTGAGCTGCTTCCTCGCATTGGAGATGAGTATCAAGTTCAAATTCCAGCTCTTATGACAGAATGTGTCTACGGGTTGCTTGTAGAAAGTCCAGCTGA TGCAATAATCTCGTCTGCTACTTACCATGATTTTTTGGTTGGATTGCCTTTATCATTAATGTGGGTCATTGAGGAAGTCGAGAGCATTAAACATGAACCA CGAGATTATCCCTGTGGTTTGACTGACACTTCCGATATAAATAAGTCTGTAAAACCTGAAAGCATTAGAGAGGCAAATATTGTTCCAGAAGTTGACTTGA AAGCTAAGGTTGAGCTTATGGATGTTACTGTGAATGATGGCATAGAAGTAGGAGAATCTGCGAAGTTATGTCTTCAGCCAGAAATAAGTAATGAAATGCT TTGTGAACTCGGTGGCAAAGATTACTGCTTGGTTCCTGGTTCTGTGGGCAACCCTTGGAGTGATTCAGAGGAGGACAGTTTTCTTCTTGGTTTATATATT TTTGGAAAAAATCTTGTTCAAGTGAAGAACTTTGTTGAGAGCAAGACGATGGGTGACATACTCTCATTTTATTACGGGAAATTTTATAGGTCTGACAGAT ACCATAAATGGTCAGAATGCCGTAAAATAAGAAACAGAAAATGTGTTTATGGGCAAAGGATTTTTACAGGATCAAGGCAACATGAAATGTTATCTCGTTT GCTTCCACAATTGTCAGAGGAATGCAAAAATATTTTGCTTCAGGCTGCTAAGGCATTTGGTGAGGGAAAAATGTTGCTGGAAGAATATGTGTTCACTTTA AAGGTGATGGTCGGATTGCATGCCCTAGTAGAAGCTGTGGGAATTGGTAAAGGGAAGCAAGACCTCACAGGCATTACCACGGAGCCTCTGAAGTCCAATC AAGTTGCTCCTGTCCGTCCAGAAATACCAATTGGAAAAGCATGTTCGACCCTTACACCTGTTGAAATTATCAACTACCTAACTGGTGGCTACCGCTTAAG CAAAGCCCGTTCAAATGATCTGTTCTGGGAAGCTGTTTGGCCTCTTTTACTTGCAAGAGGTTGGCATTCTGAGCAGCCTAATGATCATGGTTTTGCTGCT GCCTCCAGGCATTCTCTGGTCTTTCTGATCCCTGGCATCGAGAAGTTTTCAAGAAGGAAACTAGTGAAAGGAGACCACTATTTTGATTCTGTCAGTGATG TCCTGAATAAAGTTGCTTCGGATCCAACGCTTCTTGACCTTGACATTGGAGAAGATAAGGGTGATGGTAGCAAGGAAGGAACCACATGGAGCAATAAGAC AAATTTGAACCAGGGAAATTTTCCTGGTCAACAACGCCATTGTTACCTCAAACCTAGAACTCCAAGCCGCACTTCAAATGCCATGATGTTTACCGTTGTT GATACAAGTCTTGCCACTGGGGAATCAAAAAGGGTGAGGGAACTGAGGAGTTTACCCGTTGGACTGATGAGCATATGCACCTCCAGAAGTGATTCTGAAG ATAGTGAATCTGATTCTTTGAAGGTGCCAGCTGGTGAACCTGATTCTTCTGAGAACCTGTGTTCTGATATGAATGGGACTACCATGACAATATCCACAAA GAATGATTTGGACAAGGGAGTATTTTCTGACAGGGAAGATGTTGAAGATAATGCTTTAAAGCAGAGTTTCCGTATAAATGGTTCAGGTTTTGCCAAGGTT CCTGAAAAAATTCCCGAGTACCAGAAAGCTGATAAGTGTGATAGTATGCAGACAAGAAAGCGTATCAAGCGTCAAGCAACCCAGAGAGGCATACTTTGTG ACAGAAAACTTTTGGATCCAGTGGCAAAACGTCAACAGAGATTAATTGCTTGTGACCACACAAAGACAAGCTGTGGCACAATTGATAGACATGGATCAAA ACAAGATGAGCCTGGTTGTGCCGGAGAAGGTGATATCAGAGAGGATTTTCTCTTTCGAGTGGATCCACCCATGGAGAGGTTATCAGCTACAATTTCTTCT AGAGGCAGTCCAAATATTAGTAATGAAAGCACTCTCAGCAGTAATTCTTCTGGTGATGACCATCCTCATGAGAAACTTCAAACTCGGGCATTGATAGACC TTAACATGCCTGTACCTCATGATGCCGAAACGGAACCTTTAATGATGGGAGTGACAGAGGTAAAAGATGATAAAGCAAGCAGGCAAACAAAGGATTTTGG GATGCTAAAAATCTCCACATCAGCATGTGATTCTACTCCTCAGCAGTCACCTAATATGAACTTGCGAAGACACAGCACAAGAAACCGACCGCTGACCACT AAAGCTTTAGAGGCTCTCGCTTGTGGCTTTTTAAGCATAAAGCAGAAGCGGAAGAGTAGAGATGTTTTTTCTTTAGATAACCAGATGTCGAGGCCTTCAC GATGTGCTCGTAGTAAGATGAGAATCACTGAAAACTTCCAGGCTGATATGACAGATTTTGAAGGAGATGAAAGAAGAAATGGTGGTTGCAAGAGTAATGG TGGCATGGTTAGTGAGGTTCAGATTTAA
AA sequence Show only first row Show all	>Potri.008G210200.6 pacid=42807604 polypeptide=Potri.008G210200.6.p locus=Potri.008G210200 ID=Potri.008G210200.6.v4.1 annot-version=v4.1 MEMDVIKGNSEWNCIEDESAEQLLSPGICEAYRDPELLPRIGDEYQVQIPALMTECVYGLLVESPADAIISSATYHDFLVGLPLSLMWVIEEVESIKHEP RDYPCGLTDTSDINKSVKPESIREANIVPEVDLKAKVELMDVTVNDGIEVGESAKLCLQPEISNEMLCELGGKDYCLVPGSVGNPWSDSEEDSFLLGLYI FGKNLVQVKNFVESKTMGDILSFYYGKFYRSDRYHKWSECRKIRNRKCVYGQRIFTGSRQHEMLSRLLPQLSEECKNILLQAAKAFGEGKMLLEEYVFTL KVMVGLHALVEAVGIGKGKQDLTGITTEPLKSNQVAPVRPEIPIGKACSTLTPVEIINYLTGGYRLSKARSNDLFWEAVWPLLLARGWHSEQPNDHGFAA ASRHSLVFLIPGIEKFSRRKLVKGDHYFDSVSDVLNKVASDPTLLDLDIGEDKGDGSKEGTTWSNKTNLNQGNFPGQQRHCYLKPRTPSRTSNAMMFTVV DTSLATGESKRVRELRSLPVGLMSICTSRSDSEDSESDSLKVPAGEPDSSENLCSDMNGTTMTISTKNDLDKGVFSDREDVEDNALKQSFRINGSGFAKV PEKIPEYQKADKCDSMQTRKRIKRQATQRGILCDRKLLDPVAKRQQRLIACDHTKTSCGTIDRHGSKQDEPGCAGEGDIREDFLFRVDPPMERLSATISS RGSPNISNESTLSSNSSGDDHPHEKLQTRALIDLNMPVPHDAETEPLMMGVTEVKDDKASRQTKDFGMLKISTSACDSTPQQSPNMNLRRHSTRNRPLTT KALEALACGFLSIKQKRKSRDVFSLDNQMSRPSRCARSKMRITENFQADMTDFEGDERRNGGCKSNGGMVSEVQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47820			unknown protein		Potri.008G210200 [exp]	0	1
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	2.00	0.9051
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.013G059100 [exp]	2.82	0.9132
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	4.00	0.8983
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	5.47	0.8711
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	7.07	0.9036
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	8.36	0.8939
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.001G144100 [exp]	8.94	0.8767
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	9.16	0.8988	CHC901
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	9.16	0.9067
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	9.16	0.9030

Compare expression of checked genes

Potri.008G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.