Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47810 177 / 9e-58 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT5G47640 165 / 9e-53 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT4G14540 160 / 2e-51 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G13570 160 / 2e-50 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G38880 155 / 1e-49 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT1G09030 154 / 4e-49 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) AT3G53340 154 / 1e-48 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G37060 152 / 1e-47 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 146 / 4e-45 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 139 / 1e-41 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132600 [exp] 194 / 2e-64 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.013G019600 [exp] 174 / 7e-57 AT1G09030 171 / 9e-56 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.005G027400 [exp] 164 / 1e-52 AT1G09030 175 / 3e-57 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Potri.007G082200 [exp] 164 / 7e-52 AT4G14540 186 / 5e-60 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 162 / 2e-51 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.005G083400 [exp] 162 / 4e-51 AT4G14540 190 / 1e-61 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 160 / 1e-50 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 160 / 1e-50 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.013G019500 [exp] 157 / 4e-50 AT1G09030 155 / 9e-50 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036575 [exp] 182 / 2e-59 AT2G47810 177 / 2e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10041355 [exp] 177 / 1e-57 AT2G47810 176 / 7e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10004796 [exp] 169 / 8e-55 AT2G47810 152 / 4e-48 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Lus10020899 [exp] 169 / 2e-53 AT2G13570 213 / 9e-70 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10033477 [exp] 169 / 3e-53 AT2G13570 211 / 4e-69 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Lus10016616 [exp] 162 / 3e-51 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 162 / 3e-51 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10004493 [exp] 157 / 6e-50 AT1G09030 180 / 2e-59 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1) Lus10001177 [exp] 158 / 1e-49 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 158 / 2e-49 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.008G210300.1 pacid=42808143 polypeptide=Potri.008G210300.1.p locus=Potri.008G210300 ID=Potri.008G210300.1.v4.1 annot-version=v4.1 ATGGTCGATAATGTTGGTGCTGGTGCTTCAAGTGACGACGGCGGCGTCAAGCTGGAGCAAGACAGGTTGTTGCCTATAGCCAACGTTGGACGGATCATGA AGCAAATTCTGCCGGCTAACGCGAAAATCTCCAAAGAAGCCAAGGAAACGATGCAAGAATGTGCTTCAGAGTTTATTAGCTTTGTCACCGGTGAAGCATC CGAGAAGTGTAGAAAGGAAAGGCGCAAAACCGTGAATGGAGATGATGTCTGCTGGGCTATGGGAGCCCTAGGTTTTGATGACTACGCCGGGCCACTAAGA AGGTATCTTCAGAGATATAGAGAGATAGAAGGAGATAGAGCTAATCAAGAGAAGCCTGCTAACGCTAATAATACTAGTATTGCTGATCAAGAAAAAGAAG CACCACCGTCCTCCTCCTCGTCATATAGAAATAATCAAGGAATCAGGATGTAG
AA sequence Show only first row Show all	>Potri.008G210300.1 pacid=42808143 polypeptide=Potri.008G210300.1.p locus=Potri.008G210300 ID=Potri.008G210300.1.v4.1 annot-version=v4.1 MVDNVGAGASSDDGGVKLEQDRLLPIANVGRIMKQILPANAKISKEAKETMQECASEFISFVTGEASEKCRKERRKTVNGDDVCWAMGALGFDDYAGPLR RYLQRYREIEGDRANQEKPANANNTSIADQEKEAPPSSSSSYRNNQGIRM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.008G210300 [exp]	0	1
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.004G115400 [exp]	5.29	0.9274
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048100 [exp]	6.63	0.9464
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.002G086700 [exp]	8.94	0.9297
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	9.32	0.9366
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239300 [exp]	9.79	0.8959
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	10.77	0.9342
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061700 [exp]	10.81	0.9136
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	11.22	0.9276
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G208444 [exp]	11.61	0.9173
AT5G02580			Plant protein 1589 of unknown ...		Potri.006G213500 [exp]	15.42	0.8940

Compare expression of checked genes

Potri.008G210300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.