Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLDP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 1622 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 1328 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 107 / 2e-23 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G35790 105 / 1e-22 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 101 / 1e-21 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT4G00240 101 / 2e-21 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 99 / 9e-21 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 99 / 1e-20 PLDGAMMA3 phospholipase D gamma 3 (.1) AT2G42010 99 / 2e-20 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 96 / 6e-20 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G006300 [exp] 2004 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.013G012300 [exp] 1525 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.003G037700 [exp] 105 / 6e-23 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.002G016100 [exp] 102 / 5e-22 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 101 / 2e-21 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 100 / 3e-21 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 100 / 5e-21 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 99 / 1e-20 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 97 / 4e-20 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016830 [exp] 1748 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10020672 [exp] 1464 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10029873 [exp] 1278 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10037708 [exp] 983 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10036361 [exp] 101 / 1e-21 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10001293 [exp] 101 / 2e-21 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041787 [exp] 101 / 2e-21 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10012699 [exp] 100 / 5e-21 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 100 / 6e-21 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 99 / 9e-21 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G211100.2 pacid=42805796 polypeptide=Potri.008G211100.2.p locus=Potri.008G211100 ID=Potri.008G211100.2.v4.1 annot-version=v4.1 ATGGCATCGTCAGCGCAATTAATGGGAGGGGGGAGTGTTGGCGGCGGCGGTCCCCGTTACGTACAAATGCAATCAGAGCCATCAACGCCGTTACAACCAC CATCATCCTCAATCATATCTTCCTTCTTCTCTTTCCGTCAAGGTTCGACACCGGAATCCGGCCGGATTTTCGATGAATTACCACAAGCTACTATTGTATC CGTCTCTCGACCCGACCCCAGCGATATTAGTCCTGTTCAATTATCTTATACTATCGAAGTTCAATATAAGCAGTTCAAGTGGAGATTATTGAAGAAAGCG GCACAAGTGTTTTATTTACATTTTGCATTGAAGAAACGGGTGTTTTTCGAGGAAATTCTTGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAG GAATAGGAGATCATACACCAATGGTTAATGATGATGATGATGCCGACGATGAGACCATTCCATTGCATCATGATGAGAGTGCCAAAAACAGAGATGTTCC ATCAAGTGCTGCTTTACCAGTTATCCGTCCAGCGTTGGGAAGACAGAATTCAATGTCGGACCGTGCAAAGGTTACAATGCAACAATATTTAAACCACTTT TTAGGGAACATGGATATTGTGAACTCCCGAGAGGTTTGCAAGTTTTTGGAGGTCTCTAAGCTGTCATTTTCACCAGAATATGGCCCTAAGCTGAAAGAAG AATATGTTATGGTGAAGCATCTACCACGAATAGTGAAGGATGATGATTCCAGGAAATGTTGTGCTTGCAGTTGGTTTAGTTGCTGTAATGACAACTGGCA GAAGGTGTGGGCTGTTTTGAAACCAGGATTCTTGGCACTGCTGGCTGATCCTTTTGATACCAAGCTTTTGGATATAATTGTTTTTGATGTATTACCTGCT TCAGATGGAAGTGGTGAAGGCCGAGTGTCATTAGCAGCGGAAATAAAGGAGCGGAATCCTTTACGACATGGTTTTAAGGTTGCATGTGGAAACAGAAGCA TAGACTTGAGATCTAAAAATGGTGCTAGAGTTAAAGATTGGGTTGCTACAATTAATGATGCTGGACTTAGGCCTCCTGAGGGTTGGTGTCATCCTCATCG TTTTGCCTCTTTTGCTCCTCCTAGAGGTTTGTCTGAAGATGGTAGTCAGGCCCAGTGGTTTGTAGATGGTAGGGCAGCTTTTGAAGCCATTGCTTTATCA ATTGAGGATGCTAAATCTGAGATATTTATTTGTGGCTGGTGGCTGTGCCCAGAGCTTTATCTACGACGTCCTTTTCGTGCTCATGCCTCCTCTAGACTTG ATTCTTTGCTGGAAGCCAAAGCTAAACAAGGGGTTCAGATATATATTCTTCTCTATAAAGAGGTGGCTCTTGCTCTGAAAATTAATAGTGTCTATAGCAA GACAAAGCTTCTTAGTATCCATGAGAATGTGAGAGTGCTGCGCTATCCTGACCACTTTTCTACAGGTGTTTACCTTTGGTCCCACCATGAAAAGCTTGTC ATTGTTGATCACCAGATTTGCTTTATTGGAGGACTGGACTTGTGCTTTGGTCGTTATGACACTTGTGAACACAGAGTGGGTGACTGCCCTCCTCAAGTAT GGCCAGGAAAGGATTATTATAATCCAAGGGAATCTGAACCAAATTCATGGGAAGATATGATGAAAGATGAACTGGATCGTGGCAAATATCCTCGCATGCC TTGGCATGATGTCCATTGTGCTCTTTGGGGACCACCTTGCCGTGATGTAGCTAGGCACTTTGTACAGCGTTGGAACTATGCCAAGAGAAGTAAAGCTCCA TATGAAGAAGCTATTCCACTACTTATGCCTCAGCAGCACATGGTTATTCCACACTATATGGGGCAAAACAGAGAGATGGAAGTTGAAAGAAAGGGTATCA AAGATGATGTAAAAGGAATCAAACGGCAAGATTCATTTTCATCTAGATCATCTTTACAAGACATCCCTCTTCTTTTGCCTCAGGAAGCTGAGGGGCCTGA TGATTCTGGTGTAGGTCCAAAATTAAACGGGATGGACTCTACCCCTGGCAGAAGCCTTCCACATGCTTTTTGGAAATCCAAAATTGAATTGGTTGTTCCA GATATTTCAATGACAAGCTTCGTAGATAACAATGGCTCAGATCTTCATGTGAAAATGTCATCAGATTTCTCGGCGCAGCCTGGCACCAAAGCTTCAGACT TGGAGTGGTGGGAAACACAAGAAAGGGTTGATCAGGTTGGTTCTCCAGATGAAAGTGGCCAAGTTGGTCCTCGTGTTTCTTGTCATTGTCAGGTCATAAG GAGTGTGAGTCAGTGGTCTGCTGGAACAAGCCAAATTGAAGAGAGTATTCACTGTGCTTATTGTTCTCTTATTGAGAAAGCAGAGCACTTTGTCTACATC GAGAATCAATTTCTTATATCAGGTCTTTCAGGAGATGATATTATACGGAATCGTGTGTTAGAAGCTTTGTATCGGCGTATTATGCGAGCATTTAATGATA AGAAATGTTTCAGGGTCATAATTGTCATACCGCTGCTTCCAGGTTTCCAGGGTGGTGTAGATGATGGTGGTGCAGCATCTGTCAGAGCCATAATGCATTG GCAATATCGAACTATTTGCAGAGGACAGAATTCAATATTGCATAATCTTTATGATCATCTCGGTCCCAAGACACATGATTACATTTCTTTCTATGGCCTT AGATCTTATGGTCGACTTTTTGATGGTGGTCCTGTGGCCACTAGTCAGGTGTATGTCCATAGTAAAATCATGATAATAGATGACCGTACAACCTTGATTG GATCAGCCAATATCAATGACAGGAGTCTGCTTGGGTCACGAGATTCTGAGATTGGGGTACTTATTGAAGACAAAGAGTTAGTGGACTCGTTAATGGGAGG GAAGCCTCGGAAAGCTGGAAAATTTACTCTTAGTCTTCGCCTTTCATTGTGGTCTGAACACCTTGGTCTTCATTCCAAAGCGATCAATAAAGTAATTGAC CCAGTAATTGATTCAACCTACAAAGACATATGGATGTCAACTGCAAAGACAAATACCATGATCTACCAGGACGTCTTCTCTTGCGTGCCTAATGATCTTA TACATACCAGAGCCGCGCTCAGACAAAGCATGGTGTCCCGGAAGGATAGGCTTGGTCACACCACCATCGATTTAGGGATAGCCCCCCAAAAGCTTGAATC TTACCAAAACGGAGACATAAAAAACACCGATCCACTGGAGAGATTACAGTCGACGCGAGGACATCTTGTTTCTTTCCCTTTGGAGTTCATGTGCAAGGAA GACTTAAGACCTGTGTTTAATGAGAGCGAGTATTACGCGTCCCAAGTTTTTCATTAA
AA sequence Show only first row Show all	>Potri.008G211100.2 pacid=42805796 polypeptide=Potri.008G211100.2.p locus=Potri.008G211100 ID=Potri.008G211100.2.v4.1 annot-version=v4.1 MASSAQLMGGGSVGGGGPRYVQMQSEPSTPLQPPSSSIISSFFSFRQGSTPESGRIFDELPQATIVSVSRPDPSDISPVQLSYTIEVQYKQFKWRLLKKA AQVFYLHFALKKRVFFEEILEKQEQVKEWLQNLGIGDHTPMVNDDDDADDETIPLHHDESAKNRDVPSSAALPVIRPALGRQNSMSDRAKVTMQQYLNHF LGNMDIVNSREVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPRIVKDDDSRKCCACSWFSCCNDNWQKVWAVLKPGFLALLADPFDTKLLDIIVFDVLPA SDGSGEGRVSLAAEIKERNPLRHGFKVACGNRSIDLRSKNGARVKDWVATINDAGLRPPEGWCHPHRFASFAPPRGLSEDGSQAQWFVDGRAAFEAIALS IEDAKSEIFICGWWLCPELYLRRPFRAHASSRLDSLLEAKAKQGVQIYILLYKEVALALKINSVYSKTKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLV IVDHQICFIGGLDLCFGRYDTCEHRVGDCPPQVWPGKDYYNPRESEPNSWEDMMKDELDRGKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRSKAP YEEAIPLLMPQQHMVIPHYMGQNREMEVERKGIKDDVKGIKRQDSFSSRSSLQDIPLLLPQEAEGPDDSGVGPKLNGMDSTPGRSLPHAFWKSKIELVVP DISMTSFVDNNGSDLHVKMSSDFSAQPGTKASDLEWWETQERVDQVGSPDESGQVGPRVSCHCQVIRSVSQWSAGTSQIEESIHCAYCSLIEKAEHFVYI ENQFLISGLSGDDIIRNRVLEALYRRIMRAFNDKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYDHLGPKTHDYISFYGL RSYGRLFDGGPVATSQVYVHSKIMIIDDRTTLIGSANINDRSLLGSRDSEIGVLIEDKELVDSLMGGKPRKAGKFTLSLRLSLWSEHLGLHSKAINKVID PVIDSTYKDIWMSTAKTNTMIYQDVFSCVPNDLIHTRAALRQSMVSRKDRLGHTTIDLGIAPQKLESYQNGDIKNTDPLERLQSTRGHLVSFPLEFMCKE DLRPVFNESEYYASQVFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	0	1	PLDP1.1
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	1.73	0.8841
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	4.24	0.8725
AT2G34930			disease resistance family prot...		Potri.015G024500 [exp]	4.69	0.8731
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	4.89	0.8535
AT5G47400			unknown protein		Potri.001G155800 [exp]	6.63	0.8271
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.001G021500 [exp]	7.74	0.8436
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	10.19	0.8464
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	12.12	0.8519
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	12.48	0.8412
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	13.00	0.8407

Compare expression of checked genes

Potri.008G211100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.