Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 84 / 4e-18 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 79 / 2e-16 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19590 78 / 2e-16 Chaperone DnaJ-domain superfamily protein (.1) AT3G04980 77 / 1e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37750 74 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) AT5G18750 76 / 4e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37440 74 / 4e-15 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 74 / 1e-14 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G27240 73 / 3e-14 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005700 [exp] 426 / 3e-152 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G196201 [exp] 81 / 2e-17 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G221000 [exp] 82 / 3e-17 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 81 / 7e-17 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 80 / 1e-16 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 79 / 2e-16 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 79 / 3e-16 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 78 / 4e-16 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 78 / 6e-16 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037711 [exp] 194 / 4e-61 AT3G06778 149 / 2e-44 Chaperone DnaJ-domain superfamily protein (.1) Lus10016835 [exp] 189 / 1e-59 AT3G06778 140 / 3e-41 Chaperone DnaJ-domain superfamily protein (.1) Lus10036769 [exp] 78 / 5e-16 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 78 / 6e-16 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 77 / 9e-16 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 77 / 1e-15 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 77 / 1e-15 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 76 / 2e-15 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 76 / 2e-15 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 76 / 3e-15 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.008G211300.1 pacid=42806699 polypeptide=Potri.008G211300.1.p locus=Potri.008G211300 ID=Potri.008G211300.1.v4.1 annot-version=v4.1 ATGGGACTGGAATCGGAAACCAAGAAATCCCAGTTAGTGCTGGAGATTTGCTCTTTATCAACCCTATCGGTTGCCTGTGTTCACAGGCATCGTAGCAGCA GCTATGGTCCTGTAGAATCACATTTTATTGACTGGTATCGGATTCTTGGAGTAGAAGAAGATGCAGACATAGAAGTTATAAAGAAGAGGTATCGTAAACT TGCTTTGCAACTTCACCCAGACAAGAACAAGCATCCAAGAGCTGAGCTTGCCTTCAAGCTTGTCTTCGAGGCCTACTCGTATCTCACAGACAATATAAAG AGAGGAGCCTTCAACTTGGAGAGAAGCAAGAACTTCTGCATAAAGTGCAACAGAATTCCATATACACTTGGCAACAATTTGAGCAAATCACATGCACCGA AAGTAGCCGAGGAATCGAATGCTGCAAATCGCTCAAAATGGCTTCGGAATCGCGTGAGAGAAATGAAACAAAGATTTAAAGAGGAAATCAAAGTGATGGA GAACTGTTTGAAGGCTAATAGCGCATCAAGGAAAGAAGCACCACTTTTCAAACCGTCAGACAATTGCCATTTCCATAGCAACACTCGTTCTGTGACACCA AAGGAGTCCCCAGTTTTTGATCCATCAGACTATCTACTCAAAGGCTATCCTCACATCAGGACTCGGATTTACAGGAAACCTGAGAACTCTTGGGACTTGC AGAGAGAAGATACATTGAACAATTACGGTGGCCAAGGAACAGTCAAAGGAAGGTCATATCATGACTTCCCAGTCTTTGAGAAAAGATCAGGGAGAGGAAC ACTCAAGGAATCTGCTGCTTGTGTATATTCATAA
AA sequence Show only first row Show all	>Potri.008G211300.1 pacid=42806699 polypeptide=Potri.008G211300.1.p locus=Potri.008G211300 ID=Potri.008G211300.1.v4.1 annot-version=v4.1 MGLESETKKSQLVLEICSLSTLSVACVHRHRSSSYGPVESHFIDWYRILGVEEDADIEVIKKRYRKLALQLHPDKNKHPRAELAFKLVFEAYSYLTDNIK RGAFNLERSKNFCIKCNRIPYTLGNNLSKSHAPKVAEESNAANRSKWLRNRVREMKQRFKEEIKVMENCLKANSASRKEAPLFKPSDNCHFHSNTRSVTP KESPVFDPSDYLLKGYPHIRTRIYRKPENSWDLQREDTLNNYGGQGTVKGRSYHDFPVFEKRSGRGTLKESAACVYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.008G211300 [exp]	0	1
AT3G14060			unknown protein		Potri.003G067200 [exp]	1.41	0.8721
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.006G249500 [exp]	4.00	0.8249
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.006G208100 [exp]	7.34	0.8160
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G166300 [exp]	22.62	0.8124
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	28.93	0.8271
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	34.59	0.7779
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	38.06	0.7721	ACO4
AT3G07010			Pectin lyase-like superfamily ...		Potri.002G238800 [exp]	38.15	0.7916
AT3G55060			unknown protein		Potri.010G214300 [exp]	39.10	0.8058
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.004G054800 [exp]	39.79	0.7967

Compare expression of checked genes

Potri.008G211300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.