Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16810 722 / 0 APUM24 pumilio 24 (.1) AT4G25880 55 / 1e-07 APUM6 pumilio 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005600 [exp] 1105 / 0 AT3G16810 728 / 0.0 pumilio 24 (.1) Potri.010G225600 [exp] 65 / 1e-10 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 63 / 4e-10 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.003G009900 [exp] 53 / 5e-07 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 51 / 2e-06 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.014G020300 [exp] 49 / 1e-05 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.008G004300 [exp] 46 / 8e-05 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.002G120900 [exp] 45 / 0.0001 AT5G56510 278 / 2e-86 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037712 [exp] 829 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016836 [exp] 823 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10033353 [exp] 64 / 3e-10 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10037976 [exp] 64 / 5e-10 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10034808 [exp] 63 / 5e-10 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10038706 [exp] 57 / 6e-08 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10041139 [exp] 43 / 0.0007 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10036469 [exp] 43 / 0.0008 AT1G78160 441 / 5e-149 pumilio 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08144 [poplar] [flax] CPL CPL (NUC119) domain
Representative CDS sequence Show only first row Show all	>Potri.008G211400.1 pacid=42807284 polypeptide=Potri.008G211400.1.p locus=Potri.008G211400 ID=Potri.008G211400.1.v4.1 annot-version=v4.1 ATGGCGGCGAAGAAGCAAGATAGCAACAGCAAACCAAAGAAGAGAAATCGAAACCCAGATGCCAATACTAATCCAGATAGCTCATCTTTTAAAAAACCGA AGCTTGTTAGCTCAAAACCTGAAAACAAGCCAGTGGAGAAGGTTTTCAAGCCATTTAAGAAGACGTTTGGGAAAGTGAAATCGCAATCTGGTGAAGAGAA GAAGACCCCTTTATCAAAAAGAGAGCGTAGGATACATGCAAAGGAATTGACAGAGGCAAGGAAAAAGAGAAGGAAGCAATATTACACTCTTGAACAAGAG CTTGCACGTCTTTGGGAAAAGATGAGGCAGCGTAATATTGCCAAAGAAGAGAGATCAAAGATAATTACTGAAGCTATACAAAAGATGAAGGGTAAGATTC CTGAAATTGCAAGCTCCCATGTTTCGTCCCGTGTTTTGCAGACTTGCGTGAAGTATTGTTCACAAACTGAAAGGGATGCTGTATTTGACGAGCTTAAGCC ACATTTTCTTACCTTTGCGAGCAACAAGTATGCAATTCATCTTGTGACGAAAATGTTAGATAATGCTTCTAAAAAACAGTTAGCAGAGTTCATCAGCCCC CTCCGTGGGCATGTTGCTTCCCTTCTTCGACACGCAGTTGGATCTGTTGTTATTGAGCATGCATACCAGCTGGGAAATGCAACTCAAAAACAAGAGCTTC TGATGGAGTTATATTCCACTGAGCTTCAATTGTTCAAGGACCTTGCATCAATGAAAGAGAGCAGGCCTTGGTTATTTTTCAGGTTAGTGGATGTCATCTC GAAGCTGAACCTACAGAAAGGTTCAGTCTCACGACACATGGCTTCTGTCATTCAACCAATTTTGGAGAAAGGAATTGTTGATCACACCATTATACACAAG GTGCTGATAGAGTACCTCAGCATAGCTGACAAGACCTCTGCAGCAGAAATAATTCAACAATTGTCGGGTCCACTTCTTGTTCGAATGATCCATACAAGGG ATGGATCTCGGATTGGGATTCTGTGTGTCAAACATGGGAGCGCCAAGGAGCGAAAGAAGATTGTCAAAGGACTGAAAGGCACAGTAGGCAAAACAGCTCA TTTTCAATATGGAAGTTTGGTGCTCGCCTGCATTGTTTCAACTGTTGATGACACAAAGCTTGTAGCAAAGACTGTCATTCGCGAGCTGCAGACAATTTTA AAGGAGCTTGTTTTGGATAAGAATGGAAGACGCCCTTTGTTGCAGCTGCTTAATCCAAATTGTACGCGGTATTTTAGTCCTGATGAAATGGCTTCTCTTA GCTTATCTATTTCCTCTCTCAATGCCATGGGTGACTTAGAAGTGAATCGTGAAACAAAGTCTTTAAAGGATGAGGAATCTAGTGACAAGGACAATAGTGG GAGAGACGTTACAATGGTTGAGGCTGATGGAAGTGCAAGTTCTGAAACTCTTCAACTTGTTGAGGGTGGCAAAAAAGATCCTTCTATTAGAAGGCAGGAG TTGTTGGTGGGCAGTGGCCTTGCCAAGAACCTCATTGACATGTGTACCGAGAATGCAGAAGAGTTGCTTAGATCAAATTTTGGCAAAGAAGTCTTATATG AGGCTGCAACTGGGGGTTCTGGTGGCATTCTCCAACAAACTTTGGGTGATGAGTTGAATGCCTTGCATGAAGCTATAGCATCTGTTGCTGCAGAGTCTAA ATCTGAAGGATCAGAAAAGGAGCATGTCCTTGAAAATTTCCACTCGAGTCGTACAATTAGGAAATTAGTTTTGGACAACCCCGCCTTTGCCGCCACTCTA TGGAAGAAAGCTTTGAGTGGAAAATGTGAGCAGTGGGCACAAGGTCACAGTTCCAAGGTAATATGTGCATTCTTGGAATCATCAGATGCCATGGTCAGCA AACTGGCCAAGGAAGAGTTGCAGCCCTTGATAAACCGGGGTATTCTTAAATTACCTGAAAAGAAGCAACCAGCCAATGAAGGTTAA
AA sequence Show only first row Show all	>Potri.008G211400.1 pacid=42807284 polypeptide=Potri.008G211400.1.p locus=Potri.008G211400 ID=Potri.008G211400.1.v4.1 annot-version=v4.1 MAAKKQDSNSKPKKRNRNPDANTNPDSSSFKKPKLVSSKPENKPVEKVFKPFKKTFGKVKSQSGEEKKTPLSKRERRIHAKELTEARKKRRKQYYTLEQE LARLWEKMRQRNIAKEERSKIITEAIQKMKGKIPEIASSHVSSRVLQTCVKYCSQTERDAVFDELKPHFLTFASNKYAIHLVTKMLDNASKKQLAEFISP LRGHVASLLRHAVGSVVIEHAYQLGNATQKQELLMELYSTELQLFKDLASMKESRPWLFFRLVDVISKLNLQKGSVSRHMASVIQPILEKGIVDHTIIHK VLIEYLSIADKTSAAEIIQQLSGPLLVRMIHTRDGSRIGILCVKHGSAKERKKIVKGLKGTVGKTAHFQYGSLVLACIVSTVDDTKLVAKTVIRELQTIL KELVLDKNGRRPLLQLLNPNCTRYFSPDEMASLSLSISSLNAMGDLEVNRETKSLKDEESSDKDNSGRDVTMVEADGSASSETLQLVEGGKKDPSIRRQE LLVGSGLAKNLIDMCTENAEELLRSNFGKEVLYEAATGGSGGILQQTLGDELNALHEAIASVAAESKSEGSEKEHVLENFHSSRTIRKLVLDNPAFAATL WKKALSGKCEQWAQGHSSKVICAFLESSDAMVSKLAKEELQPLINRGILKLPEKKQPANEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	1.00	0.9045
AT4G19610			nucleotide binding;nucleic aci...		Potri.003G149600 [exp]	2.23	0.8423
AT2G45730			eukaryotic initiation factor 3...		Potri.002G023300 [exp]	3.31	0.8141
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	4.47	0.8521
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	4.58	0.8683
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	5.09	0.8767
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	6.48	0.8319	Pt-RHL2.1
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	7.00	0.8256
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	10.09	0.7978
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	10.72	0.7852

Compare expression of checked genes

Potri.008G211400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.