Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16850 510 / 7e-180 Pectin lyase-like superfamily protein (.1) AT5G49215 507 / 1e-178 Pectin lyase-like superfamily protein (.1.2) AT3G06770 484 / 1e-169 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 431 / 2e-148 Pectin lyase-like superfamily protein (.1) AT4G23820 377 / 9e-128 Pectin lyase-like superfamily protein (.1) AT5G41870 358 / 2e-120 Pectin lyase-like superfamily protein (.1) AT3G61490 351 / 4e-117 Pectin lyase-like superfamily protein (.1.2.3) AT3G48950 348 / 4e-116 Pectin lyase-like superfamily protein (.1) AT4G23500 340 / 2e-112 Pectin lyase-like superfamily protein (.1) AT4G33440 327 / 1e-107 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005500 [exp] 708 / 0 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 431 / 2e-148 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 417 / 5e-143 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 372 / 5e-125 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 368 / 1e-123 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 359 / 1e-120 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 354 / 4e-118 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 351 / 4e-117 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 349 / 8e-117 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037714 [exp] 557 / 0 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 550 / 0 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 409 / 6e-140 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 367 / 1e-123 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 367 / 1e-123 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 358 / 9e-120 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10023101 [exp] 351 / 3e-117 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 343 / 6e-114 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 337 / 2e-111 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 337 / 2e-111 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.008G211500.1 pacid=42808083 polypeptide=Potri.008G211500.1.p locus=Potri.008G211500 ID=Potri.008G211500.1.v4.1 annot-version=v4.1 ATGAAGATGCCAGTGGCAGTACTCTTGCTACTGGCACTGAGCATTGCCATTAGAATTGATGCAGAAGAGAGCAGCGAAGTGTGTGGTTTCAAACCAAGTT TAAAACCAAGACCACATAGTGTCTCCATCTTGGAGTTTGGTGCGGTTGGAGATGGGAAAACATTGAATACTCTTGCTTTTCAGAATGCCATTTTCTATCT CAAGTCATTTACAGACAAGGGTGGCGCTCAGCTTTATGTCCCACCTGGAAAATGGCTTACTGGAAGTTTCAGTCTTACCAGCCATCTCACACTATTCGTG GAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCATCCCATTGGGATCTTGTTGATCCCTTACCCTCATATGGTCGTGGGATTGAACTTCCTGGAAAAA GATATCAAAGTTTAATAAATGGAGATATGCTACACGATGTGGTAGTAACTGGTGACAATGGAACCATTGATGGTCAGGGTTCAGTTTGGTGGGATTGGTT CGAGTCCCATTCCTTGAACTACAGCCGCCCTCATCTTGTGGAATTTACATCGTCTGATTACGTAGTAGTTTCAAATCTTACCTTCTTGAATGCTCCTGCA TATAGCATTCATCCAGTGTATTGCAGTAATGTGGTTGTTCAAAATATTTCAGTCTCTGCTCCTGGAGAATCCCCTAACACCATCGGCATAGTTCCAGATT CTTCCAATAATGTGTGCATAGAGGACAGCCGCATCGAGGTTGGTTATGACGCGATTTCCCTCAAGAGTGGTTGGGATGAATACGGTATCGCGTACGATAG GCCTACAACAGATGTATACATAAGAAGGGTGTACCTTCAATCATCCTCAGGCTCGTCCGTAGCCTTTGGTAGTGAGATGTCTGGTGGCATTTCTAATGTG CATGTGGAGCAGGTCCACATATACAACTCATTTAGTGGCATTGAGTTTAGAACAACTAAGGGCAGAGGGGGTTATATTAAACGGATCATCATATCAGATG TTGAATTGAAAAATACCAACACGGCATTTGGTGCCATTGGTGATTGTGGGTCACATCCGGATGACAATTTTGATCCTAATGCCATCCCAGTTCTCGACCA AATCACTTTGCAAGGTGTGATTGGTTCAAACATCACTATGGCTGGCAACTTCACGGGACTTGCAGAATCTCCTTTCACCTCTCTTTGTCTGTTTAATGTC TCCTTGGCAATTCGCAACACCTTATCTCCTTGGACATGCTCAAACGTTGTTGGCTTTTCAGAGTCTGTATCCCCAGAACCGTGTCCTGAACTCGAGAGCT CCTCAGTTTGCTATTCCCTCTTGAATTCTTACGGTAAATCCACAGACATATGA
AA sequence Show only first row Show all	>Potri.008G211500.1 pacid=42808083 polypeptide=Potri.008G211500.1.p locus=Potri.008G211500 ID=Potri.008G211500.1.v4.1 annot-version=v4.1 MKMPVAVLLLLALSIAIRIDAEESSEVCGFKPSLKPRPHSVSILEFGAVGDGKTLNTLAFQNAIFYLKSFTDKGGAQLYVPPGKWLTGSFSLTSHLTLFV EKGAVILGSQDPSHWDLVDPLPSYGRGIELPGKRYQSLINGDMLHDVVVTGDNGTIDGQGSVWWDWFESHSLNYSRPHLVEFTSSDYVVVSNLTFLNAPA YSIHPVYCSNVVVQNISVSAPGESPNTIGIVPDSSNNVCIEDSRIEVGYDAISLKSGWDEYGIAYDRPTTDVYIRRVYLQSSSGSSVAFGSEMSGGISNV HVEQVHIYNSFSGIEFRTTKGRGGYIKRIIISDVELKNTNTAFGAIGDCGSHPDDNFDPNAIPVLDQITLQGVIGSNITMAGNFTGLAESPFTSLCLFNV SLAIRNTLSPWTCSNVVGFSESVSPEPCPELESSSVCYSLLNSYGKSTDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16850			Pectin lyase-like superfamily ...		Potri.008G211500 [exp]	0	1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	3.74	0.7739	Pt-SMO2.2
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.011G120100 [exp]	4.69	0.7749
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	18.65	0.7454
AT3G51470			Protein phosphatase 2C family ...		Potri.007G058700 [exp]	18.70	0.7559
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G158814 [exp]	21.44	0.7567
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	30.96	0.7448
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.008G093400 [exp]	33.82	0.7210
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	34.64	0.7247
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	34.64	0.6998	Pt-NQR.3
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	37.14	0.7308

Compare expression of checked genes

Potri.008G211500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.