Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42800 475 / 5e-166 AtRLP29 receptor like protein 29 (.1) AT1G80080 199 / 2e-58 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G68780 176 / 3e-50 RNI-like superfamily protein (.1) AT4G28560 167 / 1e-46 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 159 / 5e-44 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 155 / 5e-42 Leucine-rich repeat (LRR) family protein (.1) AT5G44700 141 / 5e-36 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 139 / 4e-35 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G12610 133 / 8e-35 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT2G26330 137 / 1e-34 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202100 [exp] 192 / 6e-56 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G114700 [exp] 160 / 5e-44 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.006G237400 [exp] 147 / 5e-38 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 146 / 9e-38 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G227600 [exp] 141 / 6e-37 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.011G104600 [exp] 144 / 7e-37 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.019G120700 [exp] 142 / 2e-36 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 142 / 2e-36 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G007925 [exp] 142 / 2e-36 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010946 [exp] 398 / 8e-136 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10031383 [exp] 395 / 5e-133 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10026208 [exp] 191 / 1e-55 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 188 / 2e-55 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 169 / 4e-47 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10034261 [exp] 163 / 2e-45 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 157 / 6e-43 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10034384 [exp] 155 / 2e-42 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10027239 [exp] 142 / 8e-38 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10011609 [exp] 145 / 2e-37 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G211800.4 pacid=42807502 polypeptide=Potri.008G211800.4.p locus=Potri.008G211800 ID=Potri.008G211800.4.v4.1 annot-version=v4.1 ATGTGCTGCACTCCCTCCACTCTGCTTCTCCTCTCTCTTGCTTCCATCCTCTCTGTCTGCTCCTCCGATGCGAAGAACATGCTTCCCTCTGAGGTTGAGA CCATTTTCAAGATCATGGAATCCATTTCCTCGGATGAAAAATGGAGAATCTCTTACCCCAACCCTTGTAATCCTGGCTCAACCTGGCTTGGAATTGAATG CAAACTAGGACAAGATAACCACCTTCATGTCTCCAGGCTTGATTTTGGTACTCATCCAAACCCAACTTGCAAGAACACTGCTGCATTTCCTTGCGAAATC TTTGATCTTCCTCATCTCCAATCTGTTTTTTTCTCTCAGTGCTTCACTCACACTAAAACCACGCTATCTGCTTCACCAAATAGAGGAGGAGCCTTCTTCG ATTCTTCACTTCAACAACTCAGTCTTAGATCAAACCCTGCACTTGTTGGTCCGATCCCACCACAAATTTCCTTCCTAAAGTCTTTAGAGATTCTTACATT GTCACAAAATCGCCTTTCTGGGCGTATTCCAGTTGAGATTTTTAGCTTGAACTCGTTAGTCCACCTTGATCTGAGCTACAACATGCTTACGGGTCCTGTA CCGATCCAGTTGGGGAATCTCAACAACCTTCAAGGCCTTGATTTGAGCTACAATTCACTTACTGGACCAATTCCTGGCACCATTGGCCGCTTGGGTATGC TTCAAAAACTTGATTTGAGTTCAAATTCATTCATTGGTACCATTCCTTACAGCATAGAAAAGCTCACTTTATTGACTTTCATGGCTTTGAGTAACAACAA ATTGAGGGGAAGTATTCCAAAAGGAATTCTGAAGTTGCAAAGTTTGCAGTACTTCATCATGGATGATAATCCAATGTATATACCTTTGCCAGCAGAGTTT GGTAAACTGGTGAAACTGCAAGAGCTGAGGCTTTCCAATTCATGCTACTCAGGAACTATACCACCAAGCTTTTCACTGCTTGTCAATCTAAGCACATTGT CTCTGCAAAACAACCGATTAACCGGTAAAATCCCAGAAGGATTCAGCAGCCTTTCTCGTATATACCACTTGAATCTTAGTGGAAACTTGTTGGGAGGTGT TATCCCTTTCAATGCAAGCTTCTTGAAGAGATTAGGAAGGAATTTGGACCTAAGTGGCAACCCGGGTCTTTGTTTGAGTCCATCTGAAGCATATAACAAT GTCAAGAGTGGCAGTGGAGTTGGTGTCTGCGGCACTGGTTCTCTGATCAAGAAATCTCAAGCTGCAGCTCATGGATTATCCAAATTATTCTTCCTGTTTG CTACTCTGGTTTTTCATGTAATGCACCATTAA
AA sequence Show only first row Show all	>Potri.008G211800.4 pacid=42807502 polypeptide=Potri.008G211800.4.p locus=Potri.008G211800 ID=Potri.008G211800.4.v4.1 annot-version=v4.1 MCCTPSTLLLLSLASILSVCSSDAKNMLPSEVETIFKIMESISSDEKWRISYPNPCNPGSTWLGIECKLGQDNHLHVSRLDFGTHPNPTCKNTAAFPCEI FDLPHLQSVFFSQCFTHTKTTLSASPNRGGAFFDSSLQQLSLRSNPALVGPIPPQISFLKSLEILTLSQNRLSGRIPVEIFSLNSLVHLDLSYNMLTGPV PIQLGNLNNLQGLDLSYNSLTGPIPGTIGRLGMLQKLDLSSNSFIGTIPYSIEKLTLLTFMALSNNKLRGSIPKGILKLQSLQYFIMDDNPMYIPLPAEF GKLVKLQELRLSNSCYSGTIPPSFSLLVNLSTLSLQNNRLTGKIPEGFSSLSRIYHLNLSGNLLGGVIPFNASFLKRLGRNLDLSGNPGLCLSPSEAYNN VKSGSGVGVCGTGSLIKKSQAAAHGLSKLFFLFATLVFHVMHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Potri.008G211800 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Potri.013G017900 [exp]	11.22	0.8856
AT2G28790			Pathogenesis-related thaumatin...		Potri.001G237600 [exp]	11.87	0.9404
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.003G056900 [exp]	12.84	0.9195	AUX22.3
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.004G162200 [exp]	21.90	0.9224
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102301 [exp]	22.31	0.9302
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	26.22	0.9294	Pt-PRX1.16
					Potri.002G192050 [exp]	33.13	0.9248
AT3G52610			unknown protein		Potri.016G078000 [exp]	35.98	0.9229
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	40.89	0.8297
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152200 [exp]	42.30	0.9219

Compare expression of checked genes

Potri.008G211800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.