Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23460 637 / 0 Pectin lyase-like superfamily protein (.1) AT1G70500 621 / 0 Pectin lyase-like superfamily protein (.1) AT1G80170 360 / 4e-121 Pectin lyase-like superfamily protein (.1) AT3G07970 322 / 4e-106 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT3G57510 318 / 2e-104 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G02460 315 / 2e-102 Pectin lyase-like superfamily protein (.1) AT2G41850 312 / 2e-102 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G56710 311 / 1e-101 Pectin lyase-like superfamily protein (.1) AT4G01890 311 / 2e-101 Pectin lyase-like superfamily protein (.1) AT5G14650 307 / 2e-100 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G159000 [exp] 717 / 0 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 705 / 0 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 358 / 3e-120 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 335 / 6e-111 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 328 / 3e-108 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 326 / 3e-107 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.005G005500 [exp] 325 / 9e-107 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159801 [exp] 315 / 2e-106 AT1G23460 290 / 2e-97 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 321 / 8e-106 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030602 [exp] 664 / 0 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 635 / 0 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030888 [exp] 407 / 1e-139 AT1G70500 461 / 3e-161 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 333 / 5e-110 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 328 / 6e-108 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 322 / 8e-106 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 307 / 3e-101 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 309 / 2e-100 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 294 / 2e-94 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 293 / 3e-94 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.008G211900.1 pacid=42808536 polypeptide=Potri.008G211900.1.p locus=Potri.008G211900 ID=Potri.008G211900.1.v4.1 annot-version=v4.1 ATGGATAAATTCTTCTTCATTTCCATTCTTGGTTTGCTGATAGTGGCTCACGGAGTTGCAGGAAACATGGCATGTGACAGCATTGCCATGCTTGAGAAGC TTGAAAACTTTGTCATAGAAGAAGTAGATGAGACAGAGTTTTCCAAGGTTGTTCCATCATGGACAAGTGAACGTGGGGGCAAGGTTCTTGTCAATGTTGA TAGCTTTGGTGCTATTGGAGATGGGGTTTCTGATGACACTCAGGCCTTTGAAAAAGCTTGGAACACAGCCTGTACTACACCAAAATCAGTTTTCTTGGTT CCTCCAGGACGGCATTATATGGTTAATGCAACGAGATTTAAGGGGCCTTGTGCTGATAGGTTGGTCATCCAGATAGATGGAACAATAGTGGCACCTGATG AGCCTAAGAATTGGGATCCAAATCTTCCTCGACTTTGGCTATACTTCTCTAAATTGAATGGAGTTCTCTTCCAAGGGAACGGAGTAATTGATGGCTCGGG AAGCAAATGGTGGGCATCATCCTGCAAAAAGAACAAGTCAAATCCTTGCAGAGGAGCACCAACAGCATTAACTATTGATTCAAGCTCAGCTGTAAAGATT AACGGCCTTACTATCCAAAACAGCCAACAGATGCACTTTGTGATTTCCCATTCTGATTCTGTGCGGGTTTCTGATGTGTTAGTCTCAGCTCCAGAAGATA GTCCCAACACTGATGGAATTCATATTACTGGATCAACTAATGTTGTTCTCCAGGACTGCAAAATTGGAACAGGTGATGATTGTGTCTCAATCGTGAACGG TAGCTCCAATATCAAGATGAAGAGAATTTTTTGTGGACCAGGACATGGAATCAGCATTGGAAGTCTTGGGAAGGATAACTCCACTGGCATGGTAACAAAA GTAGTCTTGGATACAGCATTCCTTCGGGAGACAACAAATGGCCTCAGAATTAAAACTTGGCAGGGTGGTCATGGTTATGTCCGTGGGGTACGCTTCGAGA ATGTGGGAATGGAGAATGTTGCAAACCCCGTCATTATTGATCAGTTCTACTGTGATTCTCCAAAAACATGCCATAACCAGACATCAGCTGTTGAAATAAG TGAGATAACATACCGGAATATAAGTGGTACTACAAAAAGTTCAAAGGCCATGAAATTTGCATGCAGTGATACTGTTCCTTGCAGCAACATAGTGTTGAGC AACATCAACTTAGAGAAGAATGATGGCACAGAGGAGACCTATTGCAACTCTGCACAAGGCTTTGGGTATGGTGTCGTGCATCCCTCAGCCGACTGCCTAA GTTCCCATGCCAAAAACTGTAATGTCATTGATCAGATGAAAATTTCTGAGCTTTCTGAAACCAGTACTGAGGATATTATTCACACTGAGCTCTGA
AA sequence Show only first row Show all	>Potri.008G211900.1 pacid=42808536 polypeptide=Potri.008G211900.1.p locus=Potri.008G211900 ID=Potri.008G211900.1.v4.1 annot-version=v4.1 MDKFFFISILGLLIVAHGVAGNMACDSIAMLEKLENFVIEEVDETEFSKVVPSWTSERGGKVLVNVDSFGAIGDGVSDDTQAFEKAWNTACTTPKSVFLV PPGRHYMVNATRFKGPCADRLVIQIDGTIVAPDEPKNWDPNLPRLWLYFSKLNGVLFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTALTIDSSSAVKI NGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGHGISIGSLGKDNSTGMVTK VVLDTAFLRETTNGLRIKTWQGGHGYVRGVRFENVGMENVANPVIIDQFYCDSPKTCHNQTSAVEISEITYRNISGTTKSSKAMKFACSDTVPCSNIVLS NINLEKNDGTEETYCNSAQGFGYGVVHPSADCLSSHAKNCNVIDQMKISELSETSTEDIIHTEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23460			Pectin lyase-like superfamily ...		Potri.008G211900 [exp]	0	1
AT3G05858			unknown protein		Potri.013G001800 [exp]	8.12	0.8173
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	54.25	0.7876
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	67.74	0.7996
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111700 [exp]	81.31	0.7905
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.010G099600 [exp]	146.92	0.7718
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Potri.006G065700 [exp]	162.95	0.7629
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	164.33	0.7550

Compare expression of checked genes

Potri.008G211900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.