Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23450 744 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 326 / 4e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 323 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 317 / 5e-97 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 317 / 1e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 319 / 5e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 316 / 6e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 315 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32430 312 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 310 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155100 [exp] 351 / 6e-110 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 352 / 8e-109 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 331 / 3e-100 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 325 / 1e-99 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 323 / 7e-99 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 326 / 1e-98 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 318 / 3e-98 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G237100 [exp] 320 / 4e-98 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 317 / 3e-97 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029138 [exp] 792 / 0 AT1G23450 729 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024199 [exp] 348 / 3e-107 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 345 / 3e-107 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 337 / 2e-104 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 336 / 3e-104 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 329 / 9e-101 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017032 [exp] 326 / 1e-100 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 330 / 5e-100 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021355 [exp] 323 / 1e-99 AT4G32430 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 322 / 9e-99 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G212000.3 pacid=42808093 polypeptide=Potri.008G212000.3.p locus=Potri.008G212000 ID=Potri.008G212000.3.v4.1 annot-version=v4.1 ATGCAAATGAAATCCACCAATTCCAAATTAAGACTGCATCTTGTCCGTACAGTAACAACCTTAACAGAAAAAATACACCGACCAGTGCTGTCATCGGCGG CGGCGGCGGCGACGACAACCTCATCATCATCACTGGTCTTAGAATCTTACCTCCAACCTCACATAAACGACACCATTTACGCCAAAAACAGAACACTTGA CAGCTACATAAAATCAGGGAACGTTACCCTTGCTCAAAAACTATTCGATGAAATGTCCATGTGTGATGTTGTTACATATAACTTGATGGTTTCCGGGCTT GGAAAATACGGAATACCAAAACAAGCTCTTTACTATTACTATGAAATGGTTTCCTTAGGAATTAAAGAAAGCCCATCAACTTTTTCTTCTGTTTTAAGTA TATGCAGCAGCCAAGATGGGTTTTTAAGACAAGGAATTCAAGTTCATTGCAGGATTATTAAACTTGGGTGTGGCTCCAATTTGTTCATTAGAACTTCACT TGTTGGTTTTTATATGCAGATGGGATGTTTTGATTTGGGTTTTAGTTTGTTTGATGAAATGCCTGAGAGAAATTTGGCTACTTGGAATTTGGTTTTACGC GGTTTCTGTGAACTGGGTCGGTTCCATGAATTATTAAGAGTGTATCATGAGATGAAATTGGATGGTGTACATCCGAATGGACTTAGTTTTTGTTATTTGA TTCGAGGGTGCCGTAATGAAAAGTTTTTTTATGAAGGGAAGCAGCTGCATTGTCATATTATTAAAGTTGGATGGGCGAGATCAAATATTTTTGTTGCTAA TGCTTTAGTGGATTTTTATTCTGCTTGTAAGAGTTTGAATGATGCAAGGAAATCATTTGAGTCCATTAAGGTGGAGGATGTCATTTCGTGGAATTCAATA GTGTCAGTTTATGCTGATTGTGGCTTATTATTTGAAGCTGTTGAGTTGTTTTATTTGATGCAGTTTTGGGGAAAGCCATCAATTCGTTCATTTGTTGCAC TATTGCATTTGTCAAGCTTGAATGGTAATATTTTGTTTGGGAAGCAGATTCATTGTTGTGTCTTGAAGATGGGTTTTGACATTGGAAGTTTTCATGTACA ATCTGCGTTGATTGACATGTATGGGAAATGCAGGTACATTGAGAGTTCAGTGTCCGCTTTTGAAAGTGTTCCCAAGAAAACTACACAGATTTGCAATTCT TTAATGACCTCTTTGCTGCACTGTGGTATTGTTTATGATGTAGTTGAGATGTATGGTTTGATGGTTGATGAAGGAATTGGACTTGATGAGGTTACATTTT CCACAACACTGAAAGCATTATCAGTTTCTGAATTTGCAAGTATGGACAGCTGCAGATTGGTGCACTGTTGTGCAATGAAATTAGGTTTCGGATCCGATAT TGCAGTTTCATGTTCGTTGATTGATGCATATTCAAGGTGTGGTCATGTTCAACTTTCAAAAAAGGTTTTTGAACAACTTCCTTCACCAAATGTAATCTGT TTTACGTCAATTATCAATGGGCTTGCACAGAATGGGTTGGGGAGAGAATGCCTTCAGACATTTGAAGCAATGATCCGAAAGGGTTTGGAACCTGATAAAG TGACATTCTTGTGTGTTTTAACTGGATGCAGTCATTCTGGGTTGTTTGAAGAAGGAAGATTGATTTTTTATTCAATGAAAGCCCAGTATGGGATCTGTCC AGCAAAGGAACATTTTTCCTGTATGGTTGATATCTTGGGGCGTGCAGGTTTGCTTGATGAAGCTGAAGAGTTGACGCAAAAGGCACCTGGAAGAGGTGAT TGTGTGATGTGGACCTCATTACTGCGAAGCTGTAGGATCTATAGGAATGAAATTGTAGGAAGAAGAGCAGCGAAGGCATTGTTAGAGCTTGACCCAGAAG ATTTTTCAGTGTATTTGCAAGTATCAAACTTCTATTCTGACATTGGGGAATACGAATCCTCAATGCACATTAGAGAGCTCGCTATAGCAAGAAAGTTGAC AAGGGAGATTGGTCGCAGTTTTATTGAGGTGAACAATCCCCATATAGATTGGAGCTCTGTCCAAAATAAGAAAACTGAAGACATCAGGCATCGCCTCTGA
AA sequence Show only first row Show all	>Potri.008G212000.3 pacid=42808093 polypeptide=Potri.008G212000.3.p locus=Potri.008G212000 ID=Potri.008G212000.3.v4.1 annot-version=v4.1 MQMKSTNSKLRLHLVRTVTTLTEKIHRPVLSSAAAAATTTSSSSLVLESYLQPHINDTIYAKNRTLDSYIKSGNVTLAQKLFDEMSMCDVVTYNLMVSGL GKYGIPKQALYYYYEMVSLGIKESPSTFSSVLSICSSQDGFLRQGIQVHCRIIKLGCGSNLFIRTSLVGFYMQMGCFDLGFSLFDEMPERNLATWNLVLR GFCELGRFHELLRVYHEMKLDGVHPNGLSFCYLIRGCRNEKFFYEGKQLHCHIIKVGWARSNIFVANALVDFYSACKSLNDARKSFESIKVEDVISWNSI VSVYADCGLLFEAVELFYLMQFWGKPSIRSFVALLHLSSLNGNILFGKQIHCCVLKMGFDIGSFHVQSALIDMYGKCRYIESSVSAFESVPKKTTQICNS LMTSLLHCGIVYDVVEMYGLMVDEGIGLDEVTFSTTLKALSVSEFASMDSCRLVHCCAMKLGFGSDIAVSCSLIDAYSRCGHVQLSKKVFEQLPSPNVIC FTSIINGLAQNGLGRECLQTFEAMIRKGLEPDKVTFLCVLTGCSHSGLFEEGRLIFYSMKAQYGICPAKEHFSCMVDILGRAGLLDEAEELTQKAPGRGD CVMWTSLLRSCRIYRNEIVGRRAAKALLELDPEDFSVYLQVSNFYSDIGEYESSMHIRELAIARKLTREIGRSFIEVNNPHIDWSSVQNKKTEDIRHRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	0	1
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	2.00	0.9318
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083800 [exp]	2.44	0.9372
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	2.82	0.9388
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	2.82	0.9193
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	3.87	0.9338
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	4.89	0.9271
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	8.48	0.9125
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	9.38	0.8859
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	10.00	0.9139
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	10.19	0.9001

Compare expression of checked genes

Potri.008G212000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.