Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) AT4G16100 312 / 2e-103 Protein of unknown function (DUF789) (.1) AT1G15030 276 / 9e-90 Protein of unknown function (DUF789) (.1) AT2G01260 270 / 2e-87 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G03610 198 / 2e-60 Protein of unknown function (DUF789) (.1) AT4G28150 188 / 1e-56 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 182 / 3e-54 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 166 / 6e-48 Protein of unknown function (DUF789) (.1) AT4G03420 131 / 6e-35 Protein of unknown function (DUF789) (.1) AT5G23380 117 / 8e-30 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000700 [exp] 690 / 0 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 309 / 3e-102 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 308 / 7e-102 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.013G144000 [exp] 212 / 1e-65 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 186 / 1e-55 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 186 / 4e-55 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 139 / 1e-37 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G152601 [exp] 74 / 9e-14 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 73 / 2e-13 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037716 [exp] 457 / 4e-160 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 448 / 2e-156 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 438 / 1e-148 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 311 / 1e-103 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 202 / 2e-61 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 179 / 2e-52 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10031632 [exp] 177 / 2e-52 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 163 / 2e-46 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 162 / 1e-45 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10039803 [exp] 140 / 1e-38 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.008G213300.1 pacid=42807261 polypeptide=Potri.008G213300.1.p locus=Potri.008G213300 ID=Potri.008G213300.1.v4.1 annot-version=v4.1 ATGTCAGGCTCCGGTGGTGTCTCAGTTGCCCGAAACCGTGGAGAGAATCGATTCTATGTTTCACCAGGGATCCGAAAACAACAACAATTACAACAACAGA AGCAGCAGCAGCAGCAGCAGCAACTGAAGCCGTCGATTTCGAAGGATTCAACGGCTGAGATTGAGAAGAGAAAGGGGTCCGATCAATGTGGGTCGAATTG TTCTGTTTCGGGTCGGGTTGGGTCTGACACTAATTCCACGAATTTGGATCGGTTCTTGGAGTATACTACTCCTGCCGTTCCTGCTCAGTTTCTGCCTAAG ACAAGCGTTGGGGGATGGAGAACTCGTGAAGTGCAGCATCACCAGAACTTGTATTTTGTGCTTGGGGATTTATGGGAATCTTTTAAGGAGTGGAGTGCAT ATGGAGCAGGTGTTCCTCTTCTCTTGAACGGGAGTGAGACTGTTGTGCAGTATTATGTTCCCTATTTGTCTGGCATTCAGCTTTATATTGATCCATTGCG TCCCTCCCACAGGCTGAGGAGGCCTGGTGAGGAGAGTGATACCGAGTCATCCAGGGAGACAAGTAGTGATGGTAGCTGTGACTATGGAGCAGAGAGAGTA GCAAGCAATGGTGTTTGGGAACCTTGGAGCCAGCTTAATGTTACAGATGCAAATATTCAGAGTTTGAATAGACTCTCTCTGAGAAATAAACCCTTCAGGG GTTCATCAAGTGATGAATGTGAGATTTCCAATCCACCAGGTCAGCTTATTTTTGAATACATGGAGTATGCTTCACCATTCACACGCCAACCTTTGGCTGA CCAGATTTCAGTTCTTGCATCTCAGTTTCCAGAACTCAAGACATTGAGGAGCTGTGACCTATCACCCTCAAGTTGGATTTCAGTGGCTTGGTATCCCATA TATAGGATACCCATGGGTCCAACACTGCAGAATCTGGATGCCTGCTTTCTAACCTATCATTCTCTGTCAACACCCCTTCAAAGTCAAAACACTGAGGGGA TGCAACTTCACAGTTCTGTTAGGGAGCTTCACCGTGCTGACATGTCCCTCAAGCTACCTTTGCCAACTTTTGGGCTTGCTTCCTATAAGTTTGAAGTTAC TTTCTGGAATCCGAATGGAGTCTATGAATGTCAAAAGTCCGGTTCGTTACTAAAAGCCGCTGACAACTGGCTTAGGCTTTTGCAAGTTAATCATCCTGAC TATAGGTTCTTTGTTTCCCACAACACAAGCCCAAGGTGA
AA sequence Show only first row Show all	>Potri.008G213300.1 pacid=42807261 polypeptide=Potri.008G213300.1.p locus=Potri.008G213300 ID=Potri.008G213300.1.v4.1 annot-version=v4.1 MSGSGGVSVARNRGENRFYVSPGIRKQQQLQQQKQQQQQQQLKPSISKDSTAEIEKRKGSDQCGSNCSVSGRVGSDTNSTNLDRFLEYTTPAVPAQFLPK TSVGGWRTREVQHHQNLYFVLGDLWESFKEWSAYGAGVPLLLNGSETVVQYYVPYLSGIQLYIDPLRPSHRLRRPGEESDTESSRETSSDGSCDYGAERV ASNGVWEPWSQLNVTDANIQSLNRLSLRNKPFRGSSSDECEISNPPGQLIFEYMEYASPFTRQPLADQISVLASQFPELKTLRSCDLSPSSWISVAWYPI YRIPMGPTLQNLDACFLTYHSLSTPLQSQNTEGMQLHSSVRELHRADMSLKLPLPTFGLASYKFEVTFWNPNGVYECQKSGSLLKAADNWLRLLQVNHPD YRFFVSHNTSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	0	1
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	1.00	0.8951
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	2.00	0.8815
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	2.23	0.8629	CDC2.6
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	2.44	0.8730
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	4.89	0.8587
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	8.00	0.8666
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	9.16	0.8381
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	9.53	0.8475
AT3G01820			P-loop containing nucleoside t...		Potri.015G093200 [exp]	9.59	0.8221
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	10.95	0.8444

Compare expression of checked genes

Potri.008G213300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.