Plant FIBer expression Database

Potri.008G213423 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G213423.1 pacid=42807510 polypeptide=Potri.008G213423.1.p locus=Potri.008G213423 ID=Potri.008G213423.1.v4.1 annot-version=v4.1
ATGCAACCAAGATCGTGCCAAAACAGCTTCCCAGCAAATCCCCACCAAGCAAGAAACAACGTTCATAGCCATCGTCGCAGTCTTAGGACGAATTACTACC
AGGCTTTAGCAGCTGACCACCCATTTTGTCAAGGATTTTGGCACAGCTTCATGCTTGTACCATCTCAGATTCCAGCTCATCATCCCACTCGCATACTGCT
TTGTTTTTGTTCTGTACATGCTTTTTTGTACCTTTTCCAGTGCCTCTTGCTGAACCAAATGAGGCATTGCCTGTGTGCTGCTGGAAAAACTCCTCATCTG
TCTTTTTTTTTTCCCTCTCATTTTGTCGGTTTGCTCGACTTGGCTTCTTTAACTCATTTCATTTTTTCAATCAACTGTCGCTATTTTTTGGCTCATGCAT
TACGTTCTGTTTGTACAGACATAAGTAGCTGTTATGAGATTATGTCTACACAAATAGTGCAGACCGTAACTTGTGTCTGGCTTTCTGCCATCAATGTCCA
TGAAAGCTCCTAA
AA sequence
>Potri.008G213423.1 pacid=42807510 polypeptide=Potri.008G213423.1.p locus=Potri.008G213423 ID=Potri.008G213423.1.v4.1 annot-version=v4.1
MQPRSCQNSFPANPHQARNNVHSHRRSLRTNYYQALAADHPFCQGFWHSFMLVPSQIPAHHPTRILLCFCSVHAFLYLFQCLLLNQMRHCLCAAGKTPHL
SFFFPSHFVGLLDLASLTHFIFSINCRYFLAHALRSVCTDISSCYEIMSTQIVQTVTCVWLSAINVHESS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G213423
[exp]
0 1
AT5G05800 unknown protein Potri.017G072700
[exp]
9.89 0.9090
AT1G15780 unknown protein Potri.003G026510
[exp]
13.74 0.8783
AT2G19070 SHT spermidine hydroxycinnamoyl tr... Potri.006G165200
[exp]
20.12 0.7828
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Potri.003G087900
[exp]
26.72 0.8608
Potri.002G214475
[exp]
28.37 0.8483
AT5G05800 unknown protein Potri.001G195601
[exp]
31.40 0.8488
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Potri.009G082700
[exp]
34.59 0.8753
AT2G24940 ATMAPR2 membrane-associated progestero... Potri.006G266200
[exp]
34.78 0.8721
Potri.007G067650
[exp]
35.88 0.8341
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G110640
[exp]
36.33 0.8698

Potri.008G213423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.