Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06740 126 / 4e-38 GATA GATA15 GATA transcription factor 15 (.1) AT5G49300 119 / 1e-35 GATA GATA16 GATA transcription factor 16 (.1) AT3G16870 92 / 3e-24 GATA GATA17 GATA transcription factor 17 (.1) AT4G16141 81 / 8e-20 GATA GATA type zinc finger transcription factor family protein (.1) AT5G26930 69 / 4e-16 GATA GATA23 GATA transcription factor 23 (.1) AT5G56860 68 / 5e-14 GATA GATA21, GNC GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) AT4G36620 64 / 3e-13 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT2G18380 64 / 4e-13 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT4G26150 64 / 7e-13 GATA GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) AT3G50870 63 / 1e-12 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001300 [exp] 169 / 3e-55 AT3G06740 135 / 2e-41 GATA transcription factor 15 (.1) Potri.002G199800 [exp] 103 / 3e-29 AT5G49300 112 / 1e-32 GATA transcription factor 16 (.1) Potri.014G124400 [exp] 101 / 1e-28 AT5G49300 106 / 2e-30 GATA transcription factor 16 (.1) Potri.005G020500 [exp] 95 / 2e-25 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.006G229200 [exp] 66 / 1e-13 AT4G26150 111 / 3e-28 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.007G024500 [exp] 64 / 9e-13 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.005G122700 [exp] 63 / 1e-12 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.018G053600 [exp] 60 / 2e-11 AT4G26150 75 / 4e-15 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.003G174800 [exp] 54 / 2e-09 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016849 [exp] 163 / 1e-52 AT3G06740 154 / 6e-49 GATA transcription factor 15 (.1) Lus10037721 [exp] 161 / 1e-51 AT3G06740 153 / 2e-48 GATA transcription factor 15 (.1) Lus10029863 [exp] 77 / 4e-18 AT4G16141 90 / 1e-22 GATA type zinc finger transcription factor family protein (.1) Lus10020684 [exp] 76 / 1e-17 AT4G16141 94 / 9e-24 GATA type zinc finger transcription factor family protein (.1) Lus10036329 [exp] 66 / 2e-13 AT1G02700 189 / 1e-57 unknown protein Lus10028301 [exp] 63 / 6e-13 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10031464 [exp] 62 / 6e-13 AT3G24050 69 / 3e-15 GATA transcription factor 1 (.1) Lus10010027 [exp] 62 / 6e-13 AT5G49300 87 / 8e-23 GATA transcription factor 16 (.1) Lus10041313 [exp] 56 / 4e-10 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10037398 [exp] 56 / 5e-10 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.008G213900.1 pacid=42808039 polypeptide=Potri.008G213900.1.p locus=Potri.008G213900 ID=Potri.008G213900.1.v4.1 annot-version=v4.1 ATGTTGGATCCAGCTAACAAAGGATCAGAGTCTGAAGAAATGAGTAGCAATTCACAAGAAACAGAGAGCCCACTAAAAAAGACTTGTGCTGATTGTGGTA CTTCAAAGACTCCACTTTGGAGAGGTGGTCCAGCTGGTCCAAAGTCGCTGTGTAATGCTTGTGGGATTAGAAGCAGAAAGAAGAAGAGGGATATTTTAGG GTTGAATAAAGGGGCAGCAAATGACAAGAGAGCAAAAAAGGGAAGCAATAATAATGGCTCAAGCAATAACAACAACAACAAGCAGTTAGGTGATGGATCA AAGCAGAGATTATTGGCACTGGGCAGAGAAGTTTTGATGCAAAGAAGAAAGCTGGGTGAAGAAGAGCAAGCTGCAGTGTTGTTGATGGCGTTGTCTTATG GGTCTGTTTATGCTTAA
AA sequence Show only first row Show all	>Potri.008G213900.1 pacid=42808039 polypeptide=Potri.008G213900.1.p locus=Potri.008G213900 ID=Potri.008G213900.1.v4.1 annot-version=v4.1 MLDPANKGSESEEMSSNSQETESPLKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRDILGLNKGAANDKRAKKGSNNNGSSNNNNNKQLGDGS KQRLLALGREVLMQRRKLGEEEQAAVLLMALSYGSVYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.008G213900 [exp]	0	1
AT3G19650			cyclin-related (.1)		Potri.009G088600 [exp]	1.00	0.7671
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.001G239500 [exp]	6.00	0.7612
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	14.38	0.7403
AT5G59350			unknown protein		Potri.001G238300 [exp]	17.54	0.7147
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	20.73	0.7660
AT1G12380			unknown protein		Potri.012G129100 [exp]	49.37	0.6828
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	63.91	0.6590	CYCD3.2
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	70.09	0.7045
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	73.79	0.6850
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	79.00	0.6898

Compare expression of checked genes

Potri.008G213900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.