Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64295 140 / 4e-38 F-box associated ubiquitination effector family protein (.1) AT1G64290 123 / 6e-32 F-box protein-related (.1) AT5G41720 82 / 2e-18 unknown protein AT5G49610 78 / 1e-15 F-box family protein (.1) AT2G05360 69 / 1e-12 unknown protein AT2G27520 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT5G65850 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT1G53550 49 / 3e-06 F-box family protein (.1) AT1G30920 49 / 5e-06 F-box family protein (.1) AT4G12560 46 / 2e-05 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066400 [exp] 680 / 0 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.014G187100 [exp] 633 / 0 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 617 / 0 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.006G167500 [exp] 536 / 0 AT1G64290 118 / 2e-30 F-box protein-related (.1) Potri.008G038000 [exp] 425 / 4e-149 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 377 / 2e-129 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.001G462650 [exp] 229 / 2e-72 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.010G149000 [exp] 92 / 2e-20 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.015G028500 [exp] 78 / 7e-16 AT5G49610 78 / 1e-15 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017086 [exp] 100 / 1e-23 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 93 / 6e-21 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10011415 [exp] 80 / 1e-16 AT5G41720 52 / 1e-07 unknown protein Lus10024021 [exp] 64 / 6e-11 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10041733 [exp] 63 / 1e-10 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10006473 [exp] 53 / 7e-09 AT5G41720 48 / 4e-08 unknown protein Lus10014320 [exp] 57 / 9e-09 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10015048 [exp] 54 / 8e-08 AT5G07610 74 / 3e-14 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.008G214000.1 pacid=42807966 polypeptide=Potri.008G214000.1.p locus=Potri.008G214000 ID=Potri.008G214000.1.v4.1 annot-version=v4.1 ATGGACTCAGCTGGTGAACTGTGCCGAGATGCCATCTATGAAGTGCTAACACGCTCATCAATGGAGACTGTGGGGAAATGTAGGCTTTTGTCTAAAGAGT ACAACAAATTGACCTACGAATCCCTTTTCACAAAGCTGCACAGTCAAAGAACCGCCATTGTCTCCGGTTTCCTTATCCAAAGCATGATCAAGAACGAATA TCAGGTTTTCTTTGTTTCAACTAACGGTTTGAAGAACCATCCACAAATATCCTTTGATTTTCTTCCAGAACACGTGAAGATTGTGTCATCAACGAATCAA GGAGTCCTACTTTGTCACGCACATAATAAATCATGTTATTATGTGTGTATCTCGTCCATCCAACAGTGGCAAAAAGTCCCAAATCCAAAGGCACGATATG ATACTATAGAATCTGGCCTAATGGTTGAAAGGTTAAAGCCTTTACGATACAAGATTGTGAGATTTTCGGAGCCCAAGTTTCGCTCACATAGAGAATTCTA TATGTACCACTGCATTAGAGTTGAGTTGTTTGAATCAGCAACTTGGAAATGGAAGCTGTTGGATGAAGTGAAGTTGCCTCATGAAGAGTCCCTTCATCGC ATGACAAAAGTATCTGTAAATGGCTCACTTCATTGGCTCACTTGGAAGAGAAACGTCTTTGCATTTGATGTAAAAAAGGAGAGTCATTGTTTGTTCCCAC TTCCCCTGCCAGCCTCTGAGGGCAATGATGTCAGACTTACTGAATACAAAGGAAAGCTCGCTATGACCTGCATCGATAGGGCGAGAAATTTCATGAAAGT ATGGATCATGAAGGATCATGACAGAAAACAATGGAGCAAAAGGCATTCGATAAACATAGGGGTTTTAACAAGGAAAAACCCCCACGTAAGTCCTTTGGCC TTCTGCAATGCTGATGTTGTGCTGATGGGAGAATATTTTCCTGATGTGATATTCTTCAACTTTAAGACTGGGCACATTGATATGTTGCGATTAAGGAAGG GTCTGCTCCATGGATGCTTCCCATTTCAGCTCACCTTTGCCACCAAGGAAAAAGCACAGTTAGTTCATTGCCTCAAGGCATGA
AA sequence Show only first row Show all	>Potri.008G214000.1 pacid=42807966 polypeptide=Potri.008G214000.1.p locus=Potri.008G214000 ID=Potri.008G214000.1.v4.1 annot-version=v4.1 MDSAGELCRDAIYEVLTRSSMETVGKCRLLSKEYNKLTYESLFTKLHSQRTAIVSGFLIQSMIKNEYQVFFVSTNGLKNHPQISFDFLPEHVKIVSSTNQ GVLLCHAHNKSCYYVCISSIQQWQKVPNPKARYDTIESGLMVERLKPLRYKIVRFSEPKFRSHREFYMYHCIRVELFESATWKWKLLDEVKLPHEESLHR MTKVSVNGSLHWLTWKRNVFAFDVKKESHCLFPLPLPASEGNDVRLTEYKGKLAMTCIDRARNFMKVWIMKDHDRKQWSKRHSINIGVLTRKNPHVSPLA FCNADVVLMGEYFPDVIFFNFKTGHIDMLRLRKGLLHGCFPFQLTFATKEKAQLVHCLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64295			F-box associated ubiquitinatio...		Potri.008G214000 [exp]	0	1
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G101451 [exp]	13.41	0.8983
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.010G068600 [exp]	20.04	0.8920
					Potri.010G128801 [exp]	22.91	0.8048
AT3G03680			C2 calcium/lipid-binding plant...		Potri.008G130550 [exp]	24.61	0.8907
					Potri.015G137350 [exp]	28.56	0.8408
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177800 [exp]	30.06	0.8902
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G024100 [exp]	34.05	0.8860
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	34.38	0.8858
					Potri.015G004900 [exp]	41.66	0.8851
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	44.59	0.8813

Compare expression of checked genes

Potri.008G214000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.