Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18590 820 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 240 / 2e-69 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 234 / 3e-67 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 212 / 2e-60 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G74150 118 / 1e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 116 / 4e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 91 / 2e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 84 / 1e-16 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 81 / 2e-15 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G50310 74 / 2e-13 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022000 [exp] 1161 / 0 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 238 / 2e-68 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 234 / 5e-67 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.010G230300 [exp] 220 / 1e-63 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G031200 [exp] 214 / 2e-61 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 121 / 2e-28 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 114 / 3e-26 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 113 / 6e-26 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 109 / 7e-25 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034163 [exp] 868 / 0 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 778 / 0 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031497 [exp] 242 / 5e-70 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 240 / 2e-69 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 235 / 1e-67 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 222 / 1e-62 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 204 / 3e-57 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 202 / 5e-57 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 201 / 2e-56 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 197 / 6e-55 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.008G214900.5 pacid=42806700 polypeptide=Potri.008G214900.5.p locus=Potri.008G214900 ID=Potri.008G214900.5.v4.1 annot-version=v4.1 ATGTTTGGTTTCTCTAAAAGACGCATGAAACTTGGCAGGGTCAAGAAGGTGCAACTCTCTGATTCTTCACCAGGGATTAGGAGTCCTATTAGACCCCCAA AGCGAATTATTAGTAATAATAATGCTAATAGTGAAGGTGTTGCACTTACTGCTAGTAATTCTGATGACCTTGATTATCATTGCTCCTCTTCTGCTCCGCC GGTGATTAGTAGCTCGACAGCAGGGAATAATGCTGAGAACTGGATGGTGTTGTCTATTTCCGGGGATAAACCTAACCCTCGTTTCAATCATGCAGCAACC GTCATTGGGAATAAGATGATAGTGGTTGGTGGAGAATCTGGAAGTGGATTGTTAGATGATGTACAGGTGCTTAAATTTGACCAATTCACCTGGACTTCAA TTTCATCAAAGCTTTACTTGTCACCCAGCAGTTTGCCATTGAAGATCCCTGCTTGCAGAGGCCACTGTCTGGTTTCTTGGGGGAAGAAGGCACTTCTTAT TGGAGGAAAAACTGATCCAGCAAGTGACCGAATTTCTGTGTGGGCATTTGACACAGAAACTGAGTGTTGGTCACTTGTTGAAGCAAAGGGAGATATACCG ATTGCCCGCAATGGTCACACAGTGGTCCGAGCAAGCTCAGTTTTAATTTTATTTGGGGGTGAAGATGCTAAAAGGAAAAAACTAAATGATCTGCACATGT TTGATCTCAAGTCTTTCACGTGGCTCCCTCTGCATTGCACAGGAACTGGACCATCTCCGAGATCCAACCATGTAGCAGCTCTCTATGATGATAAAAATCT ACTTATATTTGGAGGAACTTCCAAGTCCCGGACTCTGAATGACTTATATTCACTTGATTTTGAGACGATGGTATGGTCGAGAACAAAGATACGGGGCTTC CATCCATCACCAAGGGCTGGGTGTTGTGGAGTTTTATGTGGAACTAAATGGTACATAGCAGGAGGAGGAAGTAGGAAAAAACGGCACTCAGAAACTTTGA TTTATGATATATTGAAAATGGAGTGGTCCGTGGCATTTGCATCACCCCCATCTTCTATCACCACGAACAAGGGTTTCAGCCTGGTACTTGTGCAGCACAA GGAAAAGGATTTCCTTGTTGCTTTTGGTGGGAGTAAAAAGGAGCCATCAAATCAGGTTGAAGTAATGGGCATTGAGAAGAATGAATCATCCACAGGTCGT CATTCTGCTCTTAGTAAAGGCCCTGGTCGTTTGCTGTTTGAAAAGCGCTCATCATCTACAGTGTTGGCTGCTCAACTTGGTACCGGTTCTTCTCAGCGTT CAGCTGATTCTGTTGCAAGACAGAATCTGGCATCTGCAATTGAACAACATGGTTCTGGTAGGAAATCTTTGTCAGATTCCTTGCTTGTTGATCCAAATTC TGCTTCCAGAAATGTCTCCCATCGCAAGGAATTTCACCACGAGGAAGAAAACCGAATAGCTGCTAAGACAGCAAGGAACTTAGAAGATGATAATTCTTCA TCGCCGGCTGCTGAACACCGAAGTAATCATTCTGATATATCGATCCAGCCTAACAATCCAGTTAGTAAAATTAATGCAGAGATGTCTAGCATATTTGAAA TGGAAACTCCTAACTCCCACAACCAAGGAATTGGAAACGTTTCAGTAGATAACGAGGATGTAGTATCGCCGGAGAGTGATTGTACAACAGGAGGGGCTCG TGCAAGTATTTATCAATTGTACGAAACAAAAATAGCTGCTCTAATAAGAAAGAATGGTATACTTGAAGGACAACTGGCAGCTGCATTGGCAGGTCGAGAA GCAGCAGAGAAAAACCTATCCTCCATTCTGAAGAGCAGACAAGAGATGGAGAAAAAGCTGGTAGACTCAGTGAGAGAGATGGAGTTGTTGAAAGAAAAGC TGGCTGGTGTTGAGCTAGCTCAAGAAGAGGCCAACAGCTTGTCGAATATTGTCCATTCTGACAATGTAAGGCTTGAACATGACGTGGCTTTCCTGAAGGC TGTTTTGGATGATACTCAGAAGGAGCTACACTCAACTAGGGGAGTCCTTGCAGGAGAAAGGGCAAGAGCATTCCAACTACAGGTTGAAGTTTTTCATCTG AAACAAAGATTGCAATCTATGGAAAACCGAACATCTACCCCAAGAAAGCCATTCCGTGTGCAGTGA
AA sequence Show only first row Show all	>Potri.008G214900.5 pacid=42806700 polypeptide=Potri.008G214900.5.p locus=Potri.008G214900 ID=Potri.008G214900.5.v4.1 annot-version=v4.1 MFGFSKRRMKLGRVKKVQLSDSSPGIRSPIRPPKRIISNNNANSEGVALTASNSDDLDYHCSSSAPPVISSSTAGNNAENWMVLSISGDKPNPRFNHAAT VIGNKMIVVGGESGSGLLDDVQVLKFDQFTWTSISSKLYLSPSSLPLKIPACRGHCLVSWGKKALLIGGKTDPASDRISVWAFDTETECWSLVEAKGDIP IARNGHTVVRASSVLILFGGEDAKRKKLNDLHMFDLKSFTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGTSKSRTLNDLYSLDFETMVWSRTKIRGF HPSPRAGCCGVLCGTKWYIAGGGSRKKRHSETLIYDILKMEWSVAFASPPSSITTNKGFSLVLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSTGR HSALSKGPGRLLFEKRSSSTVLAAQLGTGSSQRSADSVARQNLASAIEQHGSGRKSLSDSLLVDPNSASRNVSHRKEFHHEEENRIAAKTARNLEDDNSS SPAAEHRSNHSDISIQPNNPVSKINAEMSSIFEMETPNSHNQGIGNVSVDNEDVVSPESDCTTGGARASIYQLYETKIAALIRKNGILEGQLAAALAGRE AAEKNLSSILKSRQEMEKKLVDSVREMELLKEKLAGVELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHL KQRLQSMENRTSTPRKPFRVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	0	1
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.006G253800 [exp]	4.24	0.7540
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.001G127300 [exp]	4.69	0.7348
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	4.69	0.7841
AT4G13030			P-loop containing nucleoside t...		Potri.002G199700 [exp]	7.34	0.7397
AT3G18570			Oleosin family protein (.1)		Potri.012G059400 [exp]	10.81	0.7524
AT1G30760			FAD-binding Berberine family p...		Potri.011G158800 [exp]	23.68	0.7686
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G035600 [exp]	29.05	0.7652
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	29.79	0.7346
AT3G26380			Melibiase family protein (.1)		Potri.010G048400 [exp]	34.64	0.7140
AT5G55140			ribosomal protein L30 family p...		Potri.010G076275 [exp]	35.28	0.6889

Compare expression of checked genes

Potri.008G214900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.