Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) AT2G18650 48 / 5e-06 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT3G05670 45 / 4e-05 RING/U-box protein (.1) AT2G35420 44 / 4e-05 RING/U-box superfamily protein (.1) AT3G15070 44 / 9e-05 RING/U-box superfamily protein (.1.2) AT5G41350 43 / 9e-05 RING/U-box superfamily protein (.1) AT5G43420 44 / 0.0001 RING/U-box superfamily protein (.1) AT3G05250 43 / 0.0001 RING/U-box superfamily protein (.1) AT3G60966 41 / 0.0001 RING/U-box superfamily protein (.1) AT1G80400 43 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220700 [exp] 49 / 2e-06 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.005G071300 [exp] 48 / 4e-06 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 48 / 5e-06 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.013G011400 [exp] 47 / 1e-05 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 46 / 2e-05 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.014G098200 [exp] 45 / 4e-05 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.013G095100 [exp] 44 / 4e-05 AT4G10150 159 / 3e-48 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 44 / 6e-05 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 44 / 8e-05 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034165 [exp] 233 / 3e-75 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10023507 [exp] 47 / 2e-05 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10040389 [exp] 46 / 2e-05 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10015213 [exp] 46 / 2e-05 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10036378 [exp] 45 / 3e-05 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10042171 [exp] 43 / 9e-05 AT1G14200 60 / 2e-11 RING/U-box superfamily protein (.1) Lus10010182 [exp] 43 / 0.0001 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10031468 [exp] 44 / 0.0002 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10017385 [exp] 43 / 0.0002 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10004467 [exp] 42 / 0.0002 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G215200.1 pacid=42807563 polypeptide=Potri.008G215200.1.p locus=Potri.008G215200 ID=Potri.008G215200.1.v4.1 annot-version=v4.1 ATGGAATCGTCGTCTTCGATTGCCTCGCGGAGGTCAAAGAGACAGAGTCAAGAGAAGTTCTTATCGAAAGTAATTTTGCCAGCAATACGGGGGCAGTCAT GTCCAGTATGCTTAAAAGATTTTGGTGGCGAAGAAGATTACCGAAGAGTTGCGGTGATTAGGGTTTGCTTACACGCGTATTGTCTCGATTGCATCCGCAA GTGGAGCGATATCAAGCGGAAGTGTCCTCTCTGTAATTCGGAGTTCAATTCTTGGTTCTGTAGAATCATTCTCTCCACTCGAAATTTCTCGACGGAGAAA TTACCGGTGGTCAGGGAGAGCAGAAGGGTCACTCCGCTAGATATCTTGAGCTCTAGGCAACGAGCTGGATTGAATGTTGCTAATCGGAGAAGTAGGCCAT TACCATGCCGGCGAAGATTTGGACAGCCAATGCCAGGATCAGTGGGTTCTGATGTTATTGCTCAAAGAAAGCTTCAGTGGCGTGCTAGCATATATAATCA AAGATTGCATGCTGTTCCTATATCTTCGAGGAATTGCCTCAAGCAGATTATATCAAGAAATGGTTGCATGAAACAAAGGATACTGCACAGGATAGAACCA TGGATTCAAAGGGAGCTACAGGCGATCCTTGAGGACCCAGATCCATCTGTCATTGTTCATCTTGCCTCCTCTCTTTTTATTGCAAGCCTTGAACGCAGGT CTGATGTTCAGTCAGATCAGCTTGGTGTTGAAGACCACTTTCTTGAACCACTGCGACGTTTTTTGCATGGTTGGACCAACACGTTTTGGCATGAACTAAG ATGTTTTGCAGAAAGCTCGCTTACCATGGAAACTTATGACATGGTGGTTGAATATAAACGATCAGACTAA
AA sequence Show only first row Show all	>Potri.008G215200.1 pacid=42807563 polypeptide=Potri.008G215200.1.p locus=Potri.008G215200 ID=Potri.008G215200.1.v4.1 annot-version=v4.1 MESSSSIASRRSKRQSQEKFLSKVILPAIRGQSCPVCLKDFGGEEDYRRVAVIRVCLHAYCLDCIRKWSDIKRKCPLCNSEFNSWFCRIILSTRNFSTEK LPVVRESRRVTPLDILSSRQRAGLNVANRRSRPLPCRRRFGQPMPGSVGSDVIAQRKLQWRASIYNQRLHAVPISSRNCLKQIISRNGCMKQRILHRIEP WIQRELQAILEDPDPSVIVHLASSLFIASLERRSDVQSDQLGVEDHFLEPLRRFLHGWTNTFWHELRCFAESSLTMETYDMVVEYKRSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	0	1
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	3.31	0.8785
					Potri.006G066750 [exp]	4.00	0.8280
AT4G27130			Translation initiation factor ...		Potri.011G134700 [exp]	4.47	0.8581
AT1G33050			unknown protein		Potri.011G149601 [exp]	4.69	0.8342
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	6.24	0.8577
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G014850 [exp]	6.70	0.8282
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	6.92	0.8441
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	7.74	0.8533
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	8.00	0.8397
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.005G093900 [exp]	10.00	0.7735

Compare expression of checked genes

Potri.008G215200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.