Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18580 829 / 0 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) AT5G44090 91 / 3e-19 Calcium-binding EF-hand family protein (.1) AT5G28900 87 / 3e-18 Calcium-binding EF-hand family protein (.1) AT5G28850 87 / 3e-18 Calcium-binding EF-hand family protein (.1.2) AT1G54450 87 / 5e-18 Calcium-binding EF-hand family protein (.1) AT1G03960 80 / 1e-15 Calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022300 [exp] 871 / 0 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.019G019500 [exp] 89 / 1e-18 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 88 / 2e-18 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G227100 [exp] 87 / 4e-18 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.002G035800 [exp] 86 / 1e-17 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002884 [exp] 821 / 0 AT5G18580 863 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Lus10033964 [exp] 480 / 2e-165 AT5G18580 520 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Lus10022907 [exp] 86 / 1e-17 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 85 / 3e-17 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008193 [exp] 84 / 6e-17 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008247 [exp] 83 / 9e-17 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10027963 [exp] 83 / 1e-16 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 83 / 1e-16 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10021174 [exp] 80 / 9e-16 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 80 / 1e-15 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.008G215300.2 pacid=42807570 polypeptide=Potri.008G215300.2.p locus=Potri.008G215300 ID=Potri.008G215300.2.v4.1 annot-version=v4.1 ATGTACAGTGGATCCAGCGATGGCGAGAGCCACGAGGCCGCGCAGAGGAAGATCCCGCCGGCTACGTCAATGCTTTGGGTCCGTAATCTCCGGCGGTTCA TCGGATCCGGTGCCGGGCTCGGATCTGAAGCCCTCATGGAGCTCGAGACGAAGAGAATATTGCTAGATATTTTCAAAGAGAAGCAGCAAAAGAGTGCTGA AGGTGGTACGATACCAAGTTTCTACAAGAAGAAACCTGAAGAAGGATCAATTAGTCATAGGGTTCAAAGGCTGGCAAAATATCGTTTTTTGAAGAAACAA TCAGATCTTTTACTAAATGCTGATGATCTGGATGCAATGTGGGTTTGCTTAAGAGAAAATTGTGTGATTGATGATGCCACTGGTGCAGAAAAGATGAATT ATGAAGATTTTTGTCACATAGCCTCAGTATGTACAGAGCAAATAGGCCCCAAATGTCGGCGCTTTTTCAGCCCATCTAATTTCATGAAGTTTGAAAAGGA TGAATCTGGAAGAATTGCCATTTTGCCCTTTTACCTGTATGTGATGCGCACTGTTTCACTTACACAGGCCAGAATTGATATGAGTGAGCTTGACGAGGAC TCTGATGGATTTCTTCAGCCTCATGAAATGGAGGCTTATATACGAGGTCTTATCCCTAATTTAGCGCAACTACGGGATATGCCTGTTGCATTCATTCAAA TGTATTGTCGCATAGCTGCTCACAAATTCTTTTTCTTCTGTGATCCTCATAGGCGAGGGAAATCCTGCATAAAGAAGGTGCTTCTTAGCAACTGTCTCCA GGAATTGATGGAACTGCACCAGGAAAGTGAGGAGGAAGTCACTGAAACTGAACAAGCAGAAAATTGGTTTTCTTTGATGTCTGCACAACGAATATGTGAT ATGTTCCTTGCCCTTGATAAAGATATGAATGGAACACTGAGCAAGCAAGAACTTCAAGAATATGCTGATGGTACGCTGACAGAAATCTTTATTGAAAGAG TGTTTGATGAGCATGTCCGCCGTGGAAAAATTGGTGGAGGGAATACTCGGGAAATGGACTTTGAAAGTTTTCTCGACTTTGTTTTGGCATTAGAAAATAA AGACACCCCTGAAGGGTTAACATATTTATTTCGTTGTCTTGATCTCCAAGGACGGGGATTTCTTACCACTGCTGATATTCACTCACTTTTCAGAGATGTA CACCAGAAATGGATTGAAGGCGGTAACTATGAATTGTGTATTGAGGATGTGAGGGATGAAATATGGGATATGGTCAAGCCAGCTGACCCACTGAGTATTA CACTGGCTGATCTGCTAGCTTGCAAACAAGGTGGGACTGTAGCCAGCATGCTTATAGACGTGCGTGGTTTTTGGGCCCATGATAATAGAGAGAATCTTCT CCAGGAAGAGGAAGAACCAGAAGAGGAATGA
AA sequence Show only first row Show all	>Potri.008G215300.2 pacid=42807570 polypeptide=Potri.008G215300.2.p locus=Potri.008G215300 ID=Potri.008G215300.2.v4.1 annot-version=v4.1 MYSGSSDGESHEAAQRKIPPATSMLWVRNLRRFIGSGAGLGSEALMELETKRILLDIFKEKQQKSAEGGTIPSFYKKKPEEGSISHRVQRLAKYRFLKKQ SDLLLNADDLDAMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKFEKDESGRIAILPFYLYVMRTVSLTQARIDMSELDED SDGFLQPHEMEAYIRGLIPNLAQLRDMPVAFIQMYCRIAAHKFFFFCDPHRRGKSCIKKVLLSNCLQELMELHQESEEEVTETEQAENWFSLMSAQRICD MFLALDKDMNGTLSKQELQEYADGTLTEIFIERVFDEHVRRGKIGGGNTREMDFESFLDFVLALENKDTPEGLTYLFRCLDLQGRGFLTTADIHSLFRDV HQKWIEGGNYELCIEDVRDEIWDMVKPADPLSITLADLLACKQGGTVASMLIDVRGFWAHDNRENLLQEEEEPEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	0	1
AT3G27640			Transducin/WD40 repeat-like su...		Potri.001G345400 [exp]	4.47	0.8167
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.008G055700 [exp]	6.16	0.8008
AT5G27620		CYCH;1	cyclin H;1 (.1)		Potri.005G027700 [exp]	7.74	0.7512
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	10.00	0.7793
AT1G56423			unknown protein		Potri.005G017400 [exp]	11.48	0.7884
AT4G38370			Phosphoglycerate mutase family...		Potri.009G165400 [exp]	12.00	0.7271
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.008G047100 [exp]	14.07	0.6384
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Potri.003G166400 [exp]	14.83	0.7396
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	15.32	0.7191
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.008G144600 [exp]	17.54	0.7614

Compare expression of checked genes

Potri.008G215300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.