Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 94 / 3e-21 F-box and associated interaction domains-containing protein (.1) AT4G12560 76 / 5e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G21410 58 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT3G06240 56 / 1e-08 F-box family protein (.1) AT3G22700 55 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT3G22730 54 / 5e-08 F-box and associated interaction domains-containing protein (.1) AT3G16880 54 / 7e-08 F-box and associated interaction domains-containing protein (.1) AT5G50220 54 / 7e-08 F-box family protein (.1) AT1G53360 53 / 1e-07 F-box associated ubiquitination effector family protein (.1) AT1G55070 53 / 1e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215901 [exp] 557 / 0 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 533 / 0 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.001G396800 [exp] 199 / 2e-60 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 185 / 1e-56 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 187 / 8e-56 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 141 / 1e-38 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 132 / 5e-35 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G129400 [exp] 114 / 1e-28 AT4G12560 100 / 3e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 107 / 3e-26 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006403 [exp] 108 / 4e-27 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 108 / 2e-26 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 90 / 9e-20 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 79 / 4e-16 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 79 / 5e-16 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 74 / 2e-14 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 69 / 8e-13 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10023238 [exp] 66 / 6e-12 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 66 / 1e-11 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 64 / 3e-11 AT3G06240 107 / 7e-26 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.008G216223.1 pacid=42806553 polypeptide=Potri.008G216223.1.p locus=Potri.008G216223 ID=Potri.008G216223.1.v4.1 annot-version=v4.1 ATGAAGTTTGTTCCCGGAATCAACGTACCCTATAATGATTTCTTGATTGAAAACTCTTGTAATGGGCTTCTTTGCATTTCTCAAACCTTCCAAGACGGCT CCCATGATGACATTTATTTGTGCAATCCAATTTTGGGGGAGTATATCTCCATTCCACCCGCTGCTGGTCAAGAAACAAGGCATCAGAGTAATTTCGCTTT GGGATACTGTGCCATTGCTAAAGAATACAAAGTGTTGCACACTTTTTGTTCGAAGACAGGGTCTTATTACCAACCTGAGGCTGAAATATACACGATTGGT ACAGGGAAATGGAGAAGTATTCAAAAAGCTCTTCTTAATCTTCGTATGTTCATTGTCGATAGTTTTGTGTGCGGATCAATCCATTGGGAACTTCGTGATG AAGACGATTGTGTGAATAGTATAGGTTCTTTTAACTTTGAGAATGAGCAATTTAGCGAATTGTCCTTGCCGCCTCGCTATGATGAGGGCGATGTCACTTT GACAGCTTTTGAAGGTTGCCTGGGCGTGTCTTTCTTCCACACCTATTCTGATCCTCAATATGAAATATGGATTATGAAGGAGTATGGGAACAAGGAGTCT TGGACCAAACAATTTACCGTCAAGAACCTAGGTTTTGCCAAGCTTTATGATCCCTTGATTTTCTTGAACAATGGATTAATCTTGATGATGCAATATCGTG AATTTGTCGTTTGTTATGACACAAGAAGGAAATTCATGGAAATTATTAGAATATGGCAGACTCAGGGAAATAATTATGCAATTGCATACAAACCATCCTT TGTTTCGCTGAAGGATGTAGGAAAAGGAGAACAGTTGAAGATGTCAAGGAAGCAAGCTGGTAGAGAAGATGACGAGTCCTCTTCTGAAGGAGCATATAAC TGCACCAGTCATGATCAACTTTCTGAGAGCATTCCTCCACAACACTCTGCAGAGTTTTTACCTGTTATTGCAAGTTCATGA
AA sequence Show only first row Show all	>Potri.008G216223.1 pacid=42806553 polypeptide=Potri.008G216223.1.p locus=Potri.008G216223 ID=Potri.008G216223.1.v4.1 annot-version=v4.1 MKFVPGINVPYNDFLIENSCNGLLCISQTFQDGSHDDIYLCNPILGEYISIPPAAGQETRHQSNFALGYCAIAKEYKVLHTFCSKTGSYYQPEAEIYTIG TGKWRSIQKALLNLRMFIVDSFVCGSIHWELRDEDDCVNSIGSFNFENEQFSELSLPPRYDEGDVTLTAFEGCLGVSFFHTYSDPQYEIWIMKEYGNKES WTKQFTVKNLGFAKLYDPLIFLNNGLILMMQYREFVVCYDTRRKFMEIIRIWQTQGNNYAIAYKPSFVSLKDVGKGEQLKMSRKQAGREDDESSSEGAYN CTSHDQLSESIPPQHSAEFLPVIASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07870			F-box and associated interacti...		Potri.008G216223 [exp]	0	1
					Potri.011G167566 [exp]	6.78	0.8481
AT2G23440			unknown protein		Potri.007G041500 [exp]	13.00	0.8582
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019500 [exp]	21.49	0.8445
					Potri.001G093650 [exp]	21.49	0.6927
AT4G20800			FAD-binding Berberine family p...		Potri.001G459100 [exp]	21.90	0.8445
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	31.70	0.8348
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G082800 [exp]	40.86	0.8230
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	41.42	0.8220
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	42.33	0.8268
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	42.89	0.8244

Compare expression of checked genes

Potri.008G216223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.