Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 628 / 0 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 50 / 4e-06 5'-AMP-activated protein kinase-related (.1) AT4G16360 44 / 0.0002 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT3G01510 44 / 0.0002 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023500 [exp] 900 / 0 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 610 / 0 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 609 / 0 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 265 / 3e-86 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 224 / 4e-71 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G034600 [exp] 50 / 3e-06 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 49 / 5e-06 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.016G006400 [exp] 47 / 2e-05 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 43 / 0.0002 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006516 [exp] 733 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 638 / 0 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 634 / 0 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 632 / 0 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 597 / 0 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037503 [exp] 468 / 5e-165 AT1G09020 433 / 9e-152 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037504 [exp] 259 / 3e-84 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10039076 [exp] 50 / 3e-06 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 49 / 5e-06 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037220 [exp] 48 / 1e-05 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.008G216800.3 pacid=42806012 polypeptide=Potri.008G216800.3.p locus=Potri.008G216800 ID=Potri.008G216800.3.v4.1 annot-version=v4.1 ATGGAATCTGTGAGAGAAGCTGGTGGTGGAGTTACTGGTACAGTGTTAATGAGGTTTGTCTGGACTCATGGAGGTCGAAATGTATTTCTCAGTGGTTCTT TTAATAGATGGGGTGAACTTATACCTATGTCGCCAGTTGAAGGTTGCCCTAACGTATTTCAGGCGATTTATGATATTACACCTGGTAATCATCAGTACAA GTTTTGTGTTGATGGAGAATGGCGACATGATGAACTCCAGCCTCACTCAACAACCGAATATGGGATAGTAAATATTGTCCAGTTTAACATGGAAGCCAAT TATAATCCAGAGATGATTCCAGGATCTAGTATGGAATTGGATAACGAGGCCTTTACCCGTTTGGTCAGCGTATCAGATGGCACATTGACTGGTGGAGTGC CAAGCATATCAGAGGCTGACTTACAGGTCTCTCGTCACCGGATTTCTGTATTTCTTACTACACACACTGCATATGAGTTACTTCCCCAGTCAGGCAAGGT AGTTGCCTTGGATGTTGATTTACCAGTAAAGCAAGCCTTTCACATTTTGTTTGAACAGGGAATCTCTATGGCTCCTCTTTGGGACTTCTCTAGGGGCCAG TTCGTTGGAGTGCTTAGTGCCTTGGACTTCATATTGATATTGAGAGAGCTCGGAAATAATGGGTCAAATTTGACAGAGGAAGAACTTGATACACACTCCA TATCTGCTTGGAAAGAGGGGAAAGCATATCTGGAAAGACAAATAGATGGACATGTGTGGCCTCTACCTAGACATCTCATACATGCTGGGCCATATGACAA CTTGAAAGAGGTTGCTTTGAGAATATTGCAGTATAAGGTGGCTACAGTTCCTGTTATCCACTCATCATCAGAAGACAGTTCATTTCCTCAGCTGCTGCAT CTTGCCTCGCTTTCTGGAATACTGAAATGTATTTGCAGGTACTTTAGACATTGTTCTAGCACCTTGCCTATACTCCAACTACCAATTGGTGCAATACCAG TGGGTTCATGGGTTCCGAGTATTGGAGAGCCTAGTGGGTGCCCCTTGGTGATGTTGAGACCAAGTGCTTCTCTTAGTTCAGCTTTAAACTTGTTAATTCA AGCTCAAGTAAGTTCAATACCAATAGTAGATGAGAATGACTCGTTAGTAGACATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGGACAAAATTTAT ACTCATATTAATCTTAATGAAATGACTATAAATCAGGCTTTGCAACTGGGGCAAGATGCCTATTCTTCTCATGAGCTGAGAAGTCAAAGATGTCAGATGT GTTTGCGATCTGATACATTGCATAAAGTGATGGAGCGATTGGCAAACCCGGGTGTCAGGCGACTTGTCATTGTAGAGGCTGGCAGTAAACGTGTGGAAGG CATTGTTACATTGAGTGACATTTTCAAATTTCTACTTGGCTAG
AA sequence Show only first row Show all	>Potri.008G216800.3 pacid=42806012 polypeptide=Potri.008G216800.3.p locus=Potri.008G216800 ID=Potri.008G216800.3.v4.1 annot-version=v4.1 MESVREAGGGVTGTVLMRFVWTHGGRNVFLSGSFNRWGELIPMSPVEGCPNVFQAIYDITPGNHQYKFCVDGEWRHDELQPHSTTEYGIVNIVQFNMEAN YNPEMIPGSSMELDNEAFTRLVSVSDGTLTGGVPSISEADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAFHILFEQGISMAPLWDFSRGQ FVGVLSALDFILILRELGNNGSNLTEEELDTHSISAWKEGKAYLERQIDGHVWPLPRHLIHAGPYDNLKEVALRILQYKVATVPVIHSSSEDSSFPQLLH LASLSGILKCICRYFRHCSSTLPILQLPIGAIPVGSWVPSIGEPSGCPLVMLRPSASLSSALNLLIQAQVSSIPIVDENDSLVDIYCRSDITALAKDKIY THINLNEMTINQALQLGQDAYSSHELRSQRCQMCLRSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVTLSDIFKFLLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.008G216800 [exp]	0	1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	4.35	0.7569
AT2G26800			Aldolase superfamily protein (...		Potri.006G036800 [exp]	7.54	0.6454
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	19.89	0.6680
AT1G01770			unknown protein		Potri.002G157400 [exp]	39.71	0.5807
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.001G073300 [exp]	43.42	0.6424	Pt-ARPC2.2
AT1G17330			Metal-dependent phosphohydrola...		Potri.007G072000 [exp]	48.37	0.6250
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	52.82	0.6473
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	60.17	0.6118
AT3G28430			unknown protein		Potri.006G073600 [exp]	61.77	0.6291
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	63.62	0.6441

Compare expression of checked genes

Potri.008G216800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.