Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15720 678 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 421 / 1e-139 MEF22 mitochondrial editing factor 22 (.1) AT3G46790 414 / 3e-137 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 412 / 9e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 410 / 2e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 403 / 2e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 396 / 4e-131 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 403 / 1e-130 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 399 / 8e-130 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 394 / 4e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 446 / 2e-150 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 441 / 3e-148 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 434 / 2e-144 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 427 / 6e-143 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 435 / 8e-143 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 416 / 3e-137 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 412 / 6e-137 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 413 / 9e-137 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G321700 [exp] 409 / 1e-135 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006517 [exp] 816 / 0 AT4G15720 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037505 [exp] 721 / 0 AT4G15720 611 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 430 / 6e-143 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 429 / 1e-142 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 415 / 6e-138 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 411 / 2e-136 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 408 / 7e-134 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 405 / 1e-133 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 405 / 1e-133 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 409 / 2e-133 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.008G217000.3 pacid=42808786 polypeptide=Potri.008G217000.3.p locus=Potri.008G217000 ID=Potri.008G217000.3.v4.1 annot-version=v4.1 ATGCCATGTTATCATCAAGCAAGAGCAGTTCATATCATTCAACAGCTTAAAAACTGTAAGGATTTCATTTTTTCAATCTCAACACACGCAAATCTTTTCA AATTTGGCCTTTTAAATGATACCATCACCACTAATCATCTGCTCAATTCATACTTGAGATTCCGAAGGATTCAGTATGCACACCATCTGTTCGATGAAAT GCATGAACCAAATGTGGTCTCATGGACCTCGCTCATGTCAGGTTATGTCAACATGGGCCGACCCCAATCTGCTCTCTGGCTCTATACAAAGATGTCCGAG AGTGAAGTTAGTCCCAATGGTTTCACCCTTGCGACAGTGATCAATTCGTGTTCAATTCTTGCTGATCTCAAAACTGGCAAGATGGTCCATGCCCATGTTC AGATTCTGGGGCTTCAAGGCAACCTTGTGGTGTGTTCTTCGTTGGTTGATATGTATGGGAAATGCAATGATGTCGATGGAGCTAGGATGGTTTTTGATTC GATGAGTTGTAGGAATGTTGTTTCTTGGACCGCGATGATTGCTGGTTATGCACAGAATGGAAAAGGATATGAAGCACTTGAAGTTTTTAGAGAGTTCAGT AGTTACATGATGGAACGTCCCAATCATTTTATGTTGGCCAGTGTGATCAATGCTTGTGCTAGCTTGGGGAGGCTGGTTTCAGGGAAAGTCACGCACGGGG CTGTGATACGTGGTGGGTATGAGTTGAATGATGTGGTTGCGAGCGCGCTTGTGGACATGTATGCCAAATGCGGGAGTTTTCTTTACTCAGAGAAGGTTTT TAGGAGGATTCGAAATCCTTCTGTCATCCCATATACTTCAATGATTGTGGGTGCTGCAAAATATGGACTTGGGAAGCTATCGCTCAATCTCTTTGAAGAG ATGACTGATAGAAAAGTCATGCCAAATGATGTCACCTTTGTTGGGATTTTACATGCATGCAGCCATTCAGGGCTCGTTGATGAAGGCCTTCGACTCCTGA ATTCCATGCATGAGAAACATGGAGTAATGCCTGATGTAAGGCATTACACTTGCGTTGTCGACATGCTCAGTCGAGTTGGCCGTCTAGATGAGGCTTACAA ATTAGCAAAATCTATTAGGGTGAACCCCAATGAAGGGGCCCTTTTGTGGGGCACACTTCTTTCTTCTAGTAGGCTTCATGGACGAGTGGATATGGCTGTT GAAGCAAGTAAGTGGCTGATTGAATATAATCAACAAGTAGCAGGTGCTTACGTCACATTATCAAACACTTACACATTGGCTGGGGAATGGGAAAATGCTC ATAGTCTTCGTACTGAAATGGAACTCGTTGGAGTTCACAAGGAACCTGGGTGCAGCTGGATTGAGATAAAGGACTCAATTTACGTGTTCTATGCTGGAGA CTTATCGTGTGAAAGAGGGGATGAGGTCATTAGCCTGCTGAGGGAGTTGGAGAGGAGAATGATGGAAAGGGGTTGTGTTGGAGGGAGTACGGGGCTAGTA TTTGTTGATGTGGAGCAGGAGGTCAAGGAGAAAATAGTAGGCCTGCACAGTGAGAGATTGGCCTTGGCCTTTGGATTGATAAGCATACCTAAAGGAGTCA CCATTCGAGTGATGAAGAACTTGAGGATTTGCAGTGACTGTCATGAGGCTTTCAAGTTGATCAGTAAGATTGTAGAGAGAGATTTTGTTGTGCGTGATGT TAATAGATTTCATCATTTCAAGGATGGATCCTGCACTTGCAAGGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.008G217000.3 pacid=42808786 polypeptide=Potri.008G217000.3.p locus=Potri.008G217000 ID=Potri.008G217000.3.v4.1 annot-version=v4.1 MPCYHQARAVHIIQQLKNCKDFIFSISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSE SEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFS SYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEE MTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAV EASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGSTGLV FVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLISKIVERDFVVRDVNRFHHFKDGSCTCKDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15720			Tetratricopeptide repeat (TPR)...		Potri.008G217000 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	2.82	0.8572
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	5.47	0.8252
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Potri.016G115100 [exp]	11.66	0.8165
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	14.96	0.8436
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	15.77	0.8407
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	16.12	0.7969
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	16.88	0.7808
AT5G09270			unknown protein		Potri.007G102600 [exp]	16.91	0.7583
AT3G11591			unknown protein		Potri.008G011620 [exp]	18.97	0.8331
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	22.75	0.8170

Compare expression of checked genes

Potri.008G217000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.