Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CUL1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1272 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 1001 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 976 / 0 Cullin family protein (.1) AT1G59790 431 / 1e-145 Cullin family protein (.1) AT1G26830 402 / 1e-129 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 393 / 3e-126 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 345 / 4e-107 CUL4, ATCUL4 cullin4 (.1) AT1G59800 288 / 4e-92 Cullin family protein (.1) AT2G04660 63 / 6e-10 APC2 anaphase-promoting complex/cyclosome 2 (.1) AT4G12100 52 / 1e-06 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023800 [exp] 1454 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 1203 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 1198 / 0 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 415 / 8e-135 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 413 / 8e-134 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 356 / 3e-111 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 343 / 3e-106 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G224075 [exp] 255 / 2e-81 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217700 [exp] 260 / 6e-81 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024562 [exp] 1219 / 0 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 1215 / 0 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 1206 / 0 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 1204 / 0 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 418 / 1e-135 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 414 / 3e-134 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 413 / 8e-134 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 408 / 6e-132 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 309 / 4e-95 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 206 / 1e-57 AT5G46210 913 / 0.0 cullin4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.008G217300.1 pacid=42806449 polypeptide=Potri.008G217300.1.p locus=Potri.008G217300 ID=Potri.008G217300.1.v4.1 annot-version=v4.1 ATGGCGATAAATGAGCGGAAGACTATTGATCTTGAACAAGGATGGGAGTTTATGCAAAAGGGAATTACTAAGCTGAAGAACATCCTAGAAGGGTTGCAAG AGCCGCAGTTCAGCTCCGAGGACTACATGATGCTATACACAACCATTTACAACATGTGTACGCAGAAGCCCCCTCATGATTATTCCCAGCAGCTATACGA CAAATACCGGGAGTCTTTTGAAGAATACATTACTTCAACGGTATTGCCATCGTTAAGGGAGAAGCATGATGAGTTTATGTTAAGAGAGCTAGTTAAAAGG TGGGCAAACCATAAAGTCATGGTTCGGTGGCTTTCTCGTTTCTTCCATTACCTTGACCGCTATTTCATTGCCCGGAGGTCACTTCCACCACTTAATGAAG TTGGACTTACTTGCTTCCGTGATCTGGTGTACCAGGAACTGAATGGGAAAGTGAGGGATGCTGTAATTTCTCTGATTGATCAAGAGCGTGAAGGAGAGCA GATTGACAGAGCTTTATTGAAGAATGTTTTAGATATATTTGTTGAAATTGGAATGGGACAGATGGATTACTATGAAAATGACTTTGAAGCAGCGATGCTT AAAGATACAGCTGCTTATTATTCTCGGAAGGCATCAAACTGGATCCTTGATGATTCTTGTCCAGATTACATGCTAAAGGCTGAGGAGTGTCTAAAACGGG AGAAAGATAGGGTTTCTCATTACTTGCATTCCAGTAGTGAGCCAAAATTGCTTGAGAAAGTTCAACATGAGTTGTTGTCTGTATATGCCACCCAACTGCT TGAAAAAGAGCACTCTGGATGCCATGCTTTGCTTAGAGATGACAAGGTGGAGGATTTATCAAGAATGTTCAGGCTCTTTTCTAAAATACCTCGAGGCTTA GATCCTGTTTCTGGTATATTTAAGCAGCATGTCACTGCTGAAGGTACAGCTTTGGTCAAACAGGCTGAAGATGCAGCAAGCAATAAGAAGGCAGATAAAA AGGATGTGGTTGGTTTGCAAGAACAGGTTTTTGTCAGGAAGGTGATTGAGCTGCATGACAAATATCTGGCATATGTCAATGATTGTTTCCAGAACCACAC TCTCTTCCACAAGGCCCTCAAGGAAGCTTTTGAGGTCTTTTGCAACAAGGGTGTTGCTGGAAGTTCAAGTGCAGAATTACTAGCAACCTTTTGCGATAAC ATTCTTAAGAAAGGTGGGAGTGAGAAACTGAGTGATGAGGCCATTGAGGAAACACTGGAGAAGGTGGTCAAGCTGCTTGCTTATATTAGCGACAAGGACC TGTTTGCAGAATTTTATAGGAAAAAACTTGCTCGGCGGCTTCTTTTTGATAAGAGTGCAAATGACGACCATGAGAGAAGCATTTTGACAAAGCTGAAACA GCAATGCGGTGGGCAATTCACCTCAAAGATGGAGGGGATGGTTACGGATTTGACATTAGCACGTGAAAACCAAACCAGTTTTGAGGAGTATCTAAGCAAT AACCCAAATGCAAATCCTGGGATTGACTTGACAGTTACTGTTTTGACAACTGGCTTCTGGCCTAGTTACAAGTCTTTTGATCTGAACCTTCCAGCAGAGA TGGTCAAGTGTGTTGAAGTTTTTAGGGAATTTTATCAAATAAAAACAAAGCACAGGAAACTTACCTGGATATACTCTTTGGGTACTTGTAATCTTATCGG AAAATTTGAACAAAAAACCATGGAGTTGATTGTGACAACCTACCAGGCATCTGCACTGTTACTTTTTAACTCCTCAGATAGATTAAGTTATTCCGAGATC ATGACTCAATTGAACTTGACCGATGATGATGTTGTTAGACTGCTCCACTCGCTGTCATGCGCGAAGTATAAGATTCTAAACAAAGAGCCAAATACAAAAA TAATATCTCCTACTGATCACTTTGAATTCAACTCCAAATTTACTGACAAAATGAGGAGGATCAAGATTCCTCTGCCTCCTGTAGATGAAAAGAAGAAAGT AATTGAAGATGTTGACAAGGATAGAAGGTATGCTATTGATGCCTCAATTGTGCGCATCATGAAGAGTCGCAAAGTTTTGGGTCACCAGCAATTGGTTATG GAGTGTGTTGAGCAGTTGGGCCGCATGTTCAAGCCTGATTTCAAGGCAATTAAAAAACGGATTGAAGATCTGATTACTCGAGACTATCTTGAAAGGGACA AAGAAAACCCGAACTTGTTCAGATACTTGGCATAA
AA sequence Show only first row Show all	>Potri.008G217300.1 pacid=42806449 polypeptide=Potri.008G217300.1.p locus=Potri.008G217300 ID=Potri.008G217300.1.v4.1 annot-version=v4.1 MAINERKTIDLEQGWEFMQKGITKLKNILEGLQEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKR WANHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYQELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFEAAML KDTAAYYSRKASNWILDDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL DPVSGIFKQHVTAEGTALVKQAEDAASNKKADKKDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDN ILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSN NPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQIKTKHRKLTWIYSLGTCNLIGKFEQKTMELIVTTYQASALLLFNSSDRLSYSEI MTQLNLTDDDVVRLLHSLSCAKYKILNKEPNTKIISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVM ECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKENPNLFRYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217300 [exp]	0	1	Pt-CUL1.4
AT3G17900			unknown protein		Potri.010G033900 [exp]	1.73	0.7817
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G223000 [exp]	10.00	0.7914
AT1G21630			Calcium-binding EF hand family...		Potri.005G102200 [exp]	21.77	0.7105
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	29.49	0.6917
AT2G23070			Protein kinase superfamily pro...		Potri.007G054100 [exp]	31.43	0.7109
AT4G10050			esterase/lipase/thioesterase f...		Potri.019G072900 [exp]	33.94	0.7130
AT3G04100	MADS	AGL57	AGAMOUS-like 57 (.1)		Potri.009G045900 [exp]	58.58	0.7502
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Potri.002G109300 [exp]	59.44	0.7407	OPT2.1
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	66.24	0.7564
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	68.93	0.7583

Compare expression of checked genes

Potri.008G217300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.