Plant FIBer expression Database

Potri.008G217700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02570 226 / 2e-68 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
AT1G59790 203 / 5e-63 Cullin family protein (.1)
AT1G43140 188 / 1e-54 Cullin family protein (.1)
AT1G02980 177 / 3e-50 ATCUL2, CUL2 cullin 2 (.1)
AT1G59800 165 / 1e-49 Cullin family protein (.1)
AT1G69670 44 / 9e-05 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
AT5G46210 41 / 0.0007 CUL4, ATCUL4 cullin4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G217300
[exp]
242 / 1e-74 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.010G023800
[exp]
242 / 2e-74 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.003G115500
[exp]
221 / 9e-67 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.001G117200
[exp]
215 / 2e-64 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.008G224075
[exp]
142 / 3e-42 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.013G020000
[exp]
126 / 4e-34 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.005G027800
[exp]
109 / 4e-28 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.005G027900
[exp]
105 / 2e-26 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024562
[exp]
223 / 2e-67 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10028917
[exp]
223 / 3e-67 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10032200
[exp]
218 / 3e-65 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10004334
[exp]
211 / 1e-62 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10036739
[exp]
52 / 5e-07 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1)
Lus10037188
[exp]
51 / 6e-07 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00888 Cullin Cullin family
Representative CDS sequence
>Potri.008G217700.4 pacid=42806649 polypeptide=Potri.008G217700.4.p locus=Potri.008G217700 ID=Potri.008G217700.4.v4.1 annot-version=v4.1
ATGTCCATGACCACTGCAGATGTCAAAAGCTCTGAAAGGTTTGAAGAAGGAATGGTAGTGATACAGGAGGCGGTTGATAGAGCCATTGGGATTGCAGAAG
GGACTGACAATGTCCAAGGGTTCTCATCCGAAGACTACATGCGATACTACACAACTATTTATGAACTCAGTACCCCCAACCCTCTCGGTGAATATTCTCG
GGAGTTGTATGACTATTATAAGAAGATATTTGAAGAGTACATAACCTCTAAGGTTTTGCCAGCTTTAAATGGAAAGAGAGACCAAGATTTGTTGCAAGAA
ATAGTGAGGAGATGGTCTATTCTCAAAACCATGACTTTATGGCTTTTTAGATTTTTCAACTATCTTGACAGATACTTTATTGCAAGGAGAAAACTTCCTT
CACTTCAACAAACTAGCTACAACACTTTTTACAACCTGGTGTATGCTGAGACATTTGGCCCGGTAAAAGATGCTGTGATAGCCATGATCAACCGGGAACG
TGAGGGTGAGCAGATCGATCAGGCCTTGGTGAAAAGTATTTTGGCGATCAATGCAGAGAATGGAGTAGGTTCATTAAAACAGCATAAGCAAAACCTTGAA
GAAGCAATCCTCAAGGACACTGCTGCATTTTACTCTCAAAAGGCTTCATATTGGATGCAAAAGAAATCTTATAATGAATATATGCTTGCGGTTAGCCAAT
GCTTGACACATGAGAAGGACACAGTTTCTCCTTACCTGCAGGCCGAAAACCAAAAGAAGTTACTGGAGGTTGTAGAACAAGAATTGCTCAATGCACATGC
TAATGAACTGGAAAGAAAGAAACAAGTTGATGAATTTCCCTTGGCAGATCGTAAGCAAACTTGCAGTGAAGCTGTTCTGCCATCTGCCCAGTAG
AA sequence
>Potri.008G217700.4 pacid=42806649 polypeptide=Potri.008G217700.4.p locus=Potri.008G217700 ID=Potri.008G217700.4.v4.1 annot-version=v4.1
MSMTTADVKSSERFEEGMVVIQEAVDRAIGIAEGTDNVQGFSSEDYMRYYTTIYELSTPNPLGEYSRELYDYYKKIFEEYITSKVLPALNGKRDQDLLQE
IVRRWSILKTMTLWLFRFFNYLDRYFIARRKLPSLQQTSYNTFYNLVYAETFGPVKDAVIAMINREREGEQIDQALVKSILAINAENGVGSLKQHKQNLE
EAILKDTAAFYSQKASYWMQKKSYNEYMLAVSQCLTHEKDTVSPYLQAENQKKLLEVVEQELLNAHANELERKKQVDEFPLADRKQTCSEAVLPSAQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G217700
[exp]
0 1
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Potri.005G086500
[exp]
6.00 0.8796 Pt-BRI1.1
AT3G26810 AFB2 auxin signaling F-box 2 (.1) Potri.017G061600
[exp]
10.48 0.8860 FBL4,IPS1.1
AT1G13820 alpha/beta-Hydrolases superfam... Potri.010G158800
[exp]
12.40 0.8926
AT3G26810 AFB2 auxin signaling F-box 2 (.1) Potri.001G323100
[exp]
12.96 0.8644 FBL3,Pt-IPS1.2
AT1G49430 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, lo... Potri.009G109900
[exp]
13.71 0.8745 Pt-LACS2.2
AT3G62980 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1... Potri.002G207800
[exp]
14.00 0.8411 Pt-TIR1.1,FBL2
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Potri.007G078100
[exp]
15.49 0.8490 Pt-BRI1.2
AT5G55960 unknown protein Potri.001G370500
[exp]
18.86 0.8171
AT5G03570 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THA... Potri.016G128600
[exp]
21.63 0.8370
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.006G107700
[exp]
33.04 0.8300

Potri.008G217700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.