Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06810 1235 / 0 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT3G45300 88 / 5e-18 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010448 [exp] 1493 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.009G011700 [exp] 94 / 6e-20 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033467 [exp] 1299 / 0 AT3G06810 1258 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10020908 [exp] 1294 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10036122 [exp] 93 / 1e-19 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01636 [poplar] [flax] APH Phosphotransferase enzyme family CL0016 [poplar] [flax] PF02770 [poplar] [flax] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0544 [poplar] [flax] AcylCoA_ox_dh_N PF02771 [poplar] [flax] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain CL0087 [poplar] [flax] Acyl-CoA_dh PF08028 [poplar] [flax] Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G219000.2 pacid=42808838 polypeptide=Potri.008G219000.2.p locus=Potri.008G219000 ID=Potri.008G219000.2.v4.1 annot-version=v4.1 ATGGCGAGTCATACGTCTGCTCTGTTAAGACAAGTTCAAGTAGCTCACCAATTCGATTACGACTCCTTGCTCCGCTATGCCTCTGTCCATGTCCCTGGCT TCCCTTCCTCTGCACCTTCATCTTTCACTGTCAAACAGTTTGGACATGGACAATCGAATCCTACGTTTTTATTGGAAGTGGAAAATGGAGGTTTCGTGAA ACGCTACGTTGTGAGGAAGAAACCGCCTGGTAAATTGCTTCAGTCTGCTCATGCTGTTGATAGAGAATATCAGGTTCTTCGGGCGCTGGGAGAAAGTACA AAAGTTCCAGTGCCCAAAGTGTTTTGTTTGTGTAGGGATGCGAGTGTGATTGGAACTGATTTTTATGTAATGGAGTATTTGGAAGGACGCATTTTCATAG ATCCTAAGCTTCCGGGTTTGGCACCAGAGAGGAGAGGGGCAATTTATAGAGAAATTGCTAAAGTATTGGCTGCTTTACATTCTGTTGATGTGGATGCTAT TGGTTTAGGAATATATGGACGTCGAGACCACTATTGTAAAAGACAGGTAGAGAGATGGACCAAACAATATATTGCATCAACATGTGATAGCAGGTATCCG AGTAATCCAAAGATGTTGGAGCTGGCTCAATGGTTGCTGCAACATATTCCTAGTGAAGATTCCTCAAGAGCATCGGGAGGAATTGTTCATGGAGACTTTC GCATAGATAACGTTGTATTTCATCCCAACGAGGATCGAGTAATTGGTATTCTTGACTGGGAATTATCCACGCTGGGAAACCAGATGACTGATGTTGCGTA CAGCTGTTTGGCTTACAATGTTGATATTAACCTTGAAAATCAACAAGCGGGTAAAGGTTTTGAACTTACCGGAATTCCAGAAGGAATTCCTTCACAGGCA GAATTTTTGGCAGAATACTGCTCTGCATCAGGAAAACCGTGGCCTGCTTCTGTGTGGAAGTTCTATGTTGCCTTTGCTATGTTTCGTGGGGCAGCAATCT TTGCAGGGATATACAGTCGATGGCTTATGGGCAATGCCTCAGGAGGTGAGCGTGCTCGAAATTCAGGAAAGCAAGCTAATGATCTTGTAGACTTTGCATG GGCTTATATTGCAAAAAAATCTGTTCTTCCTGATCACCCTGCATCAGTGTGCTATTCTCTTAACTATCCAGTTCTAATTGCACGAGATTGCATGAAACAA TTTGGTGACGGGAATGCAAGTGGGAGATTTGTTCCTAGCAAAAGGGTCCTAACATTGAGGAACAGGTTAATCAAGTTTGTGGAAGATCATATTTACCCCA TGGAGAATGAGTTCTATAAACTTGCTCAGTCTCCTTCACGTTGGACAGTGCACCCAGAGGAAGAGAGGTTAAAGGAGCTGGCAAAGAAAGAAGGATTGTG GAACTTATGGATACCTTTCGATAGTGCTGAGAGAGCTAGAAAATTACTATTTGATGGGAGTGGTCATATGATCTCTAATGGTGAGCATGATCAGTTCCTT GGTGCGGGTCTCTCAAACCTTGAATATGGATACCTCTGTGAGATCATGGGGCGTTCAATTTGGGCTCCACAGGTGTTAAATTGTGGCGCACCTGACACAG GAAATATGGAGGTATTGTTGCGCTACGGGAATAAAGAACATCTACTTGAATGGCTAGTTCCATTGCTTCAAGGAAAGATCCGCTCTGGATTTGCAATGAC AGAACCACAAGTTGCATCATCGGATGCAACGAATATTGAGTGTTCCATTAGAAGAGAAGGGGATTCCTACATCATTAACGGTAGGAAGTGGTGGACAAGT GGAGCAATGGATCCAAGGTGTAAAGTTCTTATAGTCATGGGTAAAACAGACTTCACTGCTGCTAATCACAAGCAACAGTCTATGATATTGGTAGACATTC ATACTCCTGGTGTACACATAAAAAGGCCACTCATGGTCTTTGGCTTCGATGATGCACCTCATGGCCATGCTGAAGTTGTATTTGATAATGTACGTGTTCC TGCAAAGAACATTCTACTGGGAGAAGGACGTGGATTTGAGATTGCGCAGGGGAGACTGGGCCCTGGAAGATTGCACCACTGCATGAGATTGATAGGTGCT GCTGAACGTGGCATGCAGATGATGGTTCAAAGGGCTCTCAGCAGAAGAGCATTTGGAAAATTAATTGCAGAGCAGGGTGCATTTCGATCAGATGTTGCCA AGTGTCGAATAGAGCTTGAGAAGGCCAGACTATTGGTGCTTGAGGCAGCTGATCAGCTTGATCGGCTTGGAAACAAAAAAGCCCGTGGTACCATTGCGAT GGCCAAGGTAGCAGCTCCAAATATGGCACTCATGGTTCTTGACATGGCAATGCAAGTGCATGGCGCTGCTGGCTTATCATCTGACACCGTTTTAGCCCAT CTTTGGGCAACTGCAAGAACACTGAGAATTGCAGATGGCCCTGATGAAGTTCACTTGGGTACTATTGCCAAGTTGGAATTACAGAGAGCTAAGCTTTAA
AA sequence Show only first row Show all	>Potri.008G219000.2 pacid=42808838 polypeptide=Potri.008G219000.2.p locus=Potri.008G219000 ID=Potri.008G219000.2.v4.1 annot-version=v4.1 MASHTSALLRQVQVAHQFDYDSLLRYASVHVPGFPSSAPSSFTVKQFGHGQSNPTFLLEVENGGFVKRYVVRKKPPGKLLQSAHAVDREYQVLRALGEST KVPVPKVFCLCRDASVIGTDFYVMEYLEGRIFIDPKLPGLAPERRGAIYREIAKVLAALHSVDVDAIGLGIYGRRDHYCKRQVERWTKQYIASTCDSRYP SNPKMLELAQWLLQHIPSEDSSRASGGIVHGDFRIDNVVFHPNEDRVIGILDWELSTLGNQMTDVAYSCLAYNVDINLENQQAGKGFELTGIPEGIPSQA EFLAEYCSASGKPWPASVWKFYVAFAMFRGAAIFAGIYSRWLMGNASGGERARNSGKQANDLVDFAWAYIAKKSVLPDHPASVCYSLNYPVLIARDCMKQ FGDGNASGRFVPSKRVLTLRNRLIKFVEDHIYPMENEFYKLAQSPSRWTVHPEEERLKELAKKEGLWNLWIPFDSAERARKLLFDGSGHMISNGEHDQFL GAGLSNLEYGYLCEIMGRSIWAPQVLNCGAPDTGNMEVLLRYGNKEHLLEWLVPLLQGKIRSGFAMTEPQVASSDATNIECSIRREGDSYIINGRKWWTS GAMDPRCKVLIVMGKTDFTAANHKQQSMILVDIHTPGVHIKRPLMVFGFDDAPHGHAEVVFDNVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGA AERGMQMMVQRALSRRAFGKLIAEQGAFRSDVAKCRIELEKARLLVLEAADQLDRLGNKKARGTIAMAKVAAPNMALMVLDMAMQVHGAAGLSSDTVLAH LWATARTLRIADGPDEVHLGTIAKLELQRAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	0	1
AT4G13780			methionine--tRNA ligase, putat...		Potri.001G317500 [exp]	5.09	0.8371
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.009G114900 [exp]	6.92	0.8252	CHB901,SWI3.4
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.012G081600 [exp]	8.48	0.8183
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	8.77	0.8195
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	10.48	0.8135
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.005G257700 [exp]	10.67	0.8212
AT4G37030			unknown protein		Potri.007G042400 [exp]	11.44	0.7523
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	11.87	0.8281
AT1G58030		CAT2	cationic amino acid transporte...		Potri.013G065000 [exp]	12.00	0.7751	Pt-CAT3.2
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	12.64	0.7871

Compare expression of checked genes

Potri.008G219000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.