Plant FIBer expression Database

Potri.008G219100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16730 611 / 0 HEB2 hypersensitive to excess boron 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G010480
[exp]
1054 / 0 AT3G16730 634 / 0.0 hypersensitive to excess boron 2, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024756
[exp]
675 / 0 AT3G16730 610 / 0.0 hypersensitive to excess boron 2, unknown protein
Lus10009771
[exp]
671 / 0 AT3G16730 603 / 0.0 hypersensitive to excess boron 2, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06278 CNDH2_N Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
PF16858 CNDH2_C Condensin II complex subunit CAP-H2 or CNDH2, C-term
PF16869 CNDH2_M Condensin II complex subunit CAP-H2 or CNDH2, mid domain
Representative CDS sequence
>Potri.008G219100.1 pacid=42807989 polypeptide=Potri.008G219100.1.p locus=Potri.008G219100 ID=Potri.008G219100.1.v4.1 annot-version=v4.1
ATGATTAGCAACAACAAAGAAGAACCAAGCAAGTACCACACTGTACAAGCAGAGCGTGATTTAGAAGCCAATTGGGAAGTCGACCTTTCAAAAAAGCTCG
AAGATTACTTGTTAAAGATTTGTTCTGGTGAAATTGCTGGAAACGAAGAGGATAGTAACGTCAATTTCGCTGAAGCTGCTTTATTGCTTCAAGGTTCAGT
TCAAGTTTATAGCAGGAAGGTTGAGTATCTATACAACTTGGTTTTGCATGCTTTGGATTTCCTTTCTCAAAAAAGGCAGCAGGAGCAATCAGAGGGCGCG
TCAGTCCAGCCTGAACGAAGTGGTTCCCAAGCAGTTTCTGAAGAAGATACTGATCAATTTTGGGTCTCAGATGATGTCCCAGTTGAACCAAGAAATTACT
TAGATGCTTCAACCAGCAAAGATGCTTCTTTCTATCACTTTGTGAAACCACCAGCAAATCTTATTGTTCTTGAAGGCGATTGCTTAGACACCAGTGGTGA
TGGCGGGGAATTAGAGTCATATCTGTTAGCCACCAATGATCTTTACCAAGACTTTATTCTCTTAAACCCATGTGATGCCATAGCCGTAAATGATTTTTTG
AAAGCAGATGATACTAGAAAGGCACAATATGGTTCTTATAGGGGCAGCTCAACACGCAAGACCTTTCAATCCCCGACAAGATGTTCTGGGGGGACTGCTT
ATAAGCCTTCTTTTGGAAAGAATCGGGATGCCAATCCCATGCAACCACCAGTTGCTGGTTGCGGTTTTCAAGCTAATGATTATAAGACGGGGCCTGATCC
TACTGTCCATGATAATTTTGACAGCAATCATGGATTTGATATGGAAGACACACATTCAGAACCTGATAATGAAGAAGATTTGGATGATGATGATGATCCC
TGGAAGCCATTGAATCCTCATGAACCTGGGAACTTAAAAGTGAAACCTTTTGAGAAAGTAAAAGCTTTCAGAAGGAATGGGAAAAAATCTGCTAAGCACG
CATCTATAACTACTCTGTTTCCACCTGCAAGGATGCATGGTCCTGTTAGTCTGGATCTCACAGAAATGTGGGAAGCACGGCAAAACGAACTTGGAAAACA
TAGGAACACACAACCTACTCCATTTTATGTAAAGCTGAGGAAATCCCTTACTAATGAAGGACATAATATTCCTGATACTTTTGGTACCTCTGGGAATGAC
AATGAAGACAATGCATATTACACTGGGTTCCCTGATTTCGGGCAGCATGATGATGAGATTCCGGAATACAAGGATGAAGATTTTCCCCCTCCACGTGAAA
AGCATGATGATGGCGCTACTTGCTTTGACACCTATAAAGATTTTGGACACGGAGATCAAAGTTCTCAAGCAAGCCTAGAAGATCTATGTCGCTCTCATCT
TGATGCTCTCCTTGCCAATATAGCTGAAACTGAGAAGCAAACTGAATTGGCTACTCGGGTTTCATCATGGAAACAGAAAATTGAGCAAAACTTGGAAGAA
CAAGACTCACATCCGCCATTCAACATTCATGCCTATGGTGAAAGGATTGTTGACAAACTCTCTCTTGAAGTGGATAGCAAAAATGTCATGGCCTTTACTG
ACGTTGTAAAGGGCCAGGAAAAGCATGATGTGGCTCGAACCTTCTCCGCGCTTCTTCAGCTGGTGAACAATGGAGAAGTTGATTTGGAAAGGAGTCAAGC
TAATGGGGAGTCGTTCTGTTACTCGGCTGTCAATCCTTTCAATGTTCGGCTCCTCGGTCATAAAAAAGATCAGGAAGGAAGACAATTTCAAATGTCCAAA
AAGAGAGTTAAATCACCAATAAGAAAGAGAGGTCCGAGGCCTGGGAAGAACGGTGGCACTAGTAGGTGCACGCCGGAAGGTAAGAAGAGGCGAAGATCTC
GACTTGTTGAACCAGTTGACTTGCATTCGACCGGGTGA
AA sequence
>Potri.008G219100.1 pacid=42807989 polypeptide=Potri.008G219100.1.p locus=Potri.008G219100 ID=Potri.008G219100.1.v4.1 annot-version=v4.1
MISNNKEEPSKYHTVQAERDLEANWEVDLSKKLEDYLLKICSGEIAGNEEDSNVNFAEAALLLQGSVQVYSRKVEYLYNLVLHALDFLSQKRQQEQSEGA
SVQPERSGSQAVSEEDTDQFWVSDDVPVEPRNYLDASTSKDASFYHFVKPPANLIVLEGDCLDTSGDGGELESYLLATNDLYQDFILLNPCDAIAVNDFL
KADDTRKAQYGSYRGSSTRKTFQSPTRCSGGTAYKPSFGKNRDANPMQPPVAGCGFQANDYKTGPDPTVHDNFDSNHGFDMEDTHSEPDNEEDLDDDDDP
WKPLNPHEPGNLKVKPFEKVKAFRRNGKKSAKHASITTLFPPARMHGPVSLDLTEMWEARQNELGKHRNTQPTPFYVKLRKSLTNEGHNIPDTFGTSGND
NEDNAYYTGFPDFGQHDDEIPEYKDEDFPPPREKHDDGATCFDTYKDFGHGDQSSQASLEDLCRSHLDALLANIAETEKQTELATRVSSWKQKIEQNLEE
QDSHPPFNIHAYGERIVDKLSLEVDSKNVMAFTDVVKGQEKHDVARTFSALLQLVNNGEVDLERSQANGESFCYSAVNPFNVRLLGHKKDQEGRQFQMSK
KRVKSPIRKRGPRPGKNGGTSRCTPEGKKRRRSRLVEPVDLHSTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16730 HEB2 hypersensitive to excess boron... Potri.008G219100
[exp]
0 1
AT1G06560 NOL1/NOP2/sun family protein (... Potri.005G204900
[exp]
2.64 0.7401
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.004G193500
[exp]
8.94 0.6960
AT5G06310 ATPOT1B, ATPOT1 protection of telomeres 1b, Nu... Potri.012G046400
[exp]
9.59 0.5870
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
10.48 0.7162
AT5G26610 D111/G-patch domain-containing... Potri.013G002100
[exp]
13.03 0.6590
AT3G24320 CHM1, ATMSH1, C... CHLOROPLAST MUTATOR, MUTL prot... Potri.010G065000
[exp]
20.34 0.7032 CHM.1
AT1G15215 SHH1, DTF1 SAWADEE homeodomain homolog 1,... Potri.018G046200
[exp]
20.49 0.6441
AT1G68580 agenet domain-containing prote... Potri.008G119400
[exp]
20.61 0.6372
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Potri.007G063900
[exp]
21.74 0.6587
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Potri.004G075700
[exp]
31.11 0.6316

Potri.008G219100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.