Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATL2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16720 197 / 2e-61 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 118 / 7e-32 RING/U-box superfamily protein (.1) AT3G62690 115 / 1e-30 ATL5 AtL5 (.1) AT2G47560 112 / 9e-30 RING/U-box superfamily protein (.1) AT1G72310 97 / 3e-23 ATL3 RING/U-box superfamily protein (.1) AT1G53820 94 / 6e-22 RING/U-box superfamily protein (.1) AT5G05810 91 / 6e-21 ATL43 RING/U-box superfamily protein (.1) AT5G05280 88 / 6e-21 RING/U-box superfamily protein (.1) AT4G09120 91 / 1e-20 RING/U-box superfamily protein (.1) AT5G17600 89 / 4e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010500 [exp] 393 / 9e-139 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.003G073300 [exp] 122 / 8e-33 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.001G162000 [exp] 113 / 2e-29 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 103 / 4e-26 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.019G091400 [exp] 102 / 1e-25 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 100 / 1e-24 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.001G212101 [exp] 94 / 2e-22 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 91 / 1e-20 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 88 / 2e-20 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006493 [exp] 233 / 8e-76 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10037490 [exp] 226 / 4e-71 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10002194 [exp] 96 / 2e-23 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10004460 [exp] 91 / 3e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 90 / 3e-20 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10000333 [exp] 90 / 3e-20 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10015167 [exp] 89 / 6e-20 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10012745 [exp] 88 / 8e-20 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 88 / 1e-19 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10015502 [exp] 88 / 2e-19 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G219200.1 pacid=42808573 polypeptide=Potri.008G219200.1.p locus=Potri.008G219200 ID=Potri.008G219200.1.v4.1 annot-version=v4.1 ATGGACCCAGGCTCGAGAGATCCACCACCTGAATACAGAGAAGGCTATGCATTAAGTGGCAAGATAATGCTTAGTGCTATTGTTATTCTCTTCTTTGTTG TCATTCTAATGGTTTTTCTCCACCTTTACGCTCGTTGGTACCTCACTCGTGCACGCCAGCGCCAAGTCCGCCGTGTCCGCAACCGCCGTACCCATCTTGT CTTCTACGTCGACTCCGCCCAAGACCCCAACAATGTCACCTCTCATGTCACGCGTGGCCTTGAAGAGACTGTCAAGAATTCTCTTCCTGTTTTTGTATAT TCAAGAAAAACCCACCAAGATTCGATTGAGTGTGCGGTTTGTTTATCCGAATTTGAAGAGAACGAAAGGGGTCGGGTCTTGCCCAAGTGTAACCACAGTT TCCACACCGAGTGTATCGATATGTGGTTTCATTCTCACTCCACTTGCCCTCTTTGTCGCTCTCCGGTTGAGCCGGTGGCGGAAAACCCCGTTCCAGAAGG TTCAAATTTCGGGATTTCAGAAGCGGGTTCGGGTCTGTGTACCTCGTGCCAGCACGAGGAGGATCACGTGGGATCGGCTTCTACGTCGTCGTTTAATGAT GGAAGGAAACCTGTTGGGCTTATTGGTGTGACCATAGACGTCCCAAGGAGAAATGGGAATTTCGAGGACGAGTCAAATACCGAGTCACCATCAGCGAGTC ACTCTTTTAGATCGCCAATGAGTCGGATGTTGTCGTTTAAGAGGATGCTAAGTAGGGAAAGAAGAGGTACTGTGTCTCCAACCGTGGCTAACTCAGTGAG CTGCGGTGGTGGGTCAGGGACGACCGAGTTTGATATTGAGCATGGGCGGGATGAGTCGATGCCTCAGCAAACTCGGTGTTAA
AA sequence Show only first row Show all	>Potri.008G219200.1 pacid=42808573 polypeptide=Potri.008G219200.1.p locus=Potri.008G219200 ID=Potri.008G219200.1.v4.1 annot-version=v4.1 MDPGSRDPPPEYREGYALSGKIMLSAIVILFFVVILMVFLHLYARWYLTRARQRQVRRVRNRRTHLVFYVDSAQDPNNVTSHVTRGLEETVKNSLPVFVY SRKTHQDSIECAVCLSEFEENERGRVLPKCNHSFHTECIDMWFHSHSTCPLCRSPVEPVAENPVPEGSNFGISEAGSGLCTSCQHEEDHVGSASTSSFND GRKPVGLIGVTIDVPRRNGNFEDESNTESPSASHSFRSPMSRMLSFKRMLSRERRGTVSPTVANSVSCGGGSGTTEFDIEHGRDESMPQQTRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	0	1	ATL2.3
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	1.73	0.9360
					Potri.018G078801 [exp]	2.00	0.9331
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G069500 [exp]	2.23	0.8982
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	2.44	0.9263
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	4.58	0.8963
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	6.32	0.9231	ERF6
AT5G37490			ARM repeat superfamily protein...		Potri.017G135000 [exp]	6.70	0.8807
AT2G17705			unknown protein		Potri.005G107700 [exp]	8.71	0.8754
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	9.00	0.8873
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	9.38	0.8911

Compare expression of checked genes

Potri.008G219200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.