Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06840 136 / 9e-41 unknown protein AT5G49170 125 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010600 [exp] 228 / 7e-77 AT3G06840 132 / 4e-39 unknown protein Potri.001G162100 [exp] 44 / 1e-05 AT3G06840 53 / 7e-09 unknown protein Potri.003G073200 [exp] 43 / 2e-05 AT3G06840 46 / 2e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006495 [exp] 101 / 5e-27 AT5G49170 118 / 9e-34 unknown protein Lus10036097 [exp] 93 / 6e-24 AT5G49170 97 / 2e-25 unknown protein Lus10022872 [exp] 90 / 9e-23 AT5G49170 97 / 6e-26 unknown protein Lus10024954 [exp] 86 / 4e-21 AT5G49170 96 / 3e-25 unknown protein Lus10006494 [exp] 78 / 5e-18 AT3G06840 102 / 1e-27 unknown protein Lus10026782 [exp] 49 / 3e-08 ND 42 / 4e-06
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G219500.1 pacid=42806476 polypeptide=Potri.008G219500.1.p locus=Potri.008G219500 ID=Potri.008G219500.1.v4.1 annot-version=v4.1 ATGTCTAGCAAGTCCCCAATCTTTCCCATTCCTGAACCTCAACACTTCAGCGACTATGGCTTTGACCCGCAGATTGATTACTTTCAGTTCCTGGAGGAAG CAAGAAACCACAAGAGAGAGACGACGACAACAAGGTCTTCCGTTGACTCCTTACACTTCAAGCTCCAGAAACCCATTTCAAAAGAGGAGTCTGCTAATAG AACGATCCACAAACCCAACAACAGGAAGAAGAAATGGTGGAGAAAAGCTTTGCTATTCTTTAAGTGGAAGTGGATCCACAGTAATCACAAGGATGATTAT CTTGGTCACGGAGATGTTCATATAGCAAGGGCTAGAGCTTTCGGAGCTTCCATCTCAGGGCCTGTTTATTTAACTGATAGTTTAAGTGGATCAAGCACTC CTTACAGGTCCACTAGCAGACCATCATCAGGGCCTCTAGCTGGATCCTTGACTCCGGCAAGAAAGGGTGATATGGAGATACCTTATTTGAGTCTGAGGGA GCTTAACATGGAGCAGCGGCAGCAGCAACGGAGTATCTCTACTTCTGCAATGCCAATATATTTGGTCACTTGA
AA sequence Show only first row Show all	>Potri.008G219500.1 pacid=42806476 polypeptide=Potri.008G219500.1.p locus=Potri.008G219500 ID=Potri.008G219500.1.v4.1 annot-version=v4.1 MSSKSPIFPIPEPQHFSDYGFDPQIDYFQFLEEARNHKRETTTTRSSVDSLHFKLQKPISKEESANRTIHKPNNRKKKWWRKALLFFKWKWIHSNHKDDY LGHGDVHIARARAFGASISGPVYLTDSLSGSSTPYRSTSRPSSGPLAGSLTPARKGDMEIPYLSLRELNMEQRQQQRSISTSAMPIYLVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06840			unknown protein		Potri.008G219500 [exp]	0	1
AT5G52540			Protein of unknown function (D...		Potri.004G079300 [exp]	2.44	0.8859
AT4G29110			unknown protein		Potri.018G086500 [exp]	7.21	0.8780
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022100 [exp]	7.28	0.8863
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004700 [exp]	9.38	0.8729
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	13.26	0.8627	Ptr4CL4,4CL3.1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	16.24	0.8773
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	16.88	0.8595
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.006G226100 [exp]	17.32	0.8585
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	17.32	0.8653
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	18.33	0.8544

Compare expression of checked genes

Potri.008G219500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.