Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MFP2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06860 1161 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 814 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G15290 130 / 1e-33 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT4G16210 87 / 1e-18 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT4G16800 80 / 4e-16 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 66 / 9e-12 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G31810 51 / 2e-06 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 48 / 2e-05 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30660 45 / 0.0002 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 44 / 0.0002 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011900 [exp] 1333 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 841 / 0 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.001G398600 [exp] 128 / 1e-32 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.008G104500 [exp] 90 / 1e-19 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 86 / 3e-18 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 86 / 5e-18 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.003G080800 [exp] 75 / 2e-14 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 72 / 9e-14 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.018G018800 [exp] 48 / 2e-05 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037495 [exp] 1233 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10043224 [exp] 803 / 0 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011102 [exp] 789 / 0 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10006502 [exp] 694 / 0 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 545 / 0 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10020828 [exp] 137 / 6e-36 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 132 / 3e-34 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10010994 [exp] 89 / 5e-19 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10016920 [exp] 84 / 2e-17 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 84 / 1e-16 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00725 [poplar] [flax] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF02737 [poplar] [flax] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.008G220400.1 pacid=42807148 polypeptide=Potri.008G220400.1.p locus=Potri.008G220400 ID=Potri.008G220400.1.v4.1 annot-version=v4.1 ATGAAAGGAAGCAGGACCAAGGGAACAACCACTATTGAAGTCGGAGCTGATGGGGTGGCTTTAATCACCCTCATCAATCCTCCTGTCAATGCACTCTCTT CTGATGTGTTGAACAGCTTGAAGGACAGTTATGAGCAAGCTTTAAGAAGAGATGATGTGAAGGCAATCGTTATAACAGGTGCGAAGGGAAAGTTCTCTGG TGGTGCTGACATTTCTTCTTTTGAGGAAGTTCAAGAGGGAAAAGTGAATGAACCAAAACCTGATTTTATATTCTCCGAGGTTCTCGGTGACACTTTAGAA GCTGCAAAAAAACCTTCAGTTGCTGCAATTGATGGCCTTGCCTTAGGTGGAGGACTAGAGGTTGCAATGGCTTGCCATGCTCGTATCTCAACCCCTACTG CTCAATTAAGCCTACCTGAACTTCAACTTGGACTAATTCCTGGATTTGGAGGAACACAGAGACTTCCACGTCTTGTGGGTATCACAAAGGCCCTTGAAAT GATGCTGACATCAAAACCAGTAAAGGGTGAGGAAGCACATGCCCTGGGCCTTGTGGATGCTGTTGTTTCGCCAAATGAGTTGGTAAGTACTGCACGTCAG TGGGCCCTTGATATCTTCGAATGTAGGAGACCATGGATTGCTAGCCTTTACAAGACTGAAAAATTAGATTCCCTTGGCGAGGCAAGGGAAATATTCAAGT TTGCTAGAGCACAAGCCCAGAAACGAGCTCCTAATCTTTTACATCCTATAGTTTGCATCAACGTTGTTGAACATGGCATAGTTTCTGGTCCACGTGCTGG ACTCTACAAGGAGTTTGAAAGTTTCCAAGAACTTGTGCGTTCTGACATCAGCAAGAGCTTGGTCCACATCTTCTTTGCTCTGCATGGAACAACCAAGGTT CCAGGAATTACTGATCTGGGCTTTGTACCTAGACTAGTGAAGAAGGTTGCTGTGCTTGGTGGAGGATTAATGGGTTCGGGAATAGCAACTGCATTAATTC TCAGTAATTATCCAGTGATCCTGAAAGAAGTAAATGACCAATTCTTGCAGGCTGGTATTGGTAGAGTCAGAGCCAATCTCCAAAGTCGTGTCAAGAAAGG AAAAATGACACAAGAAAAGTTTGAAAAAACCATGTCTCTTCTCAAGGGTTCTCTTGATTATGAAAGTTTTAAAGACGTGGACATGGTCATAGAGGCTGTG ATTGAAAATGTTTCTTTGAAGCAACAAATTTTTTCTGATCTAGAAAAATATTGCCCACCACATTGCATACTTGCCAGCAACACTTCCACAATCGACTTGA ACTTGATTGGAAAGCAGACCAAGTCGCAAGATAGGATTATTGGAGCCCATTTCTTTAGTCCGGCTCATGTTATGCCACTTTTGGAAATTGTCCGTACCAA GCAGACATCTCCTCAAGTAATTGTGGATTTATTAGATGTTGGGAAGAAAATAAGGAAGACTCCAGTCGTGGTTGGAAATTGCACAGGCTTTGCTGTCAAC AGGATGTTCTTTCCTTACACCCAAGCTGCTATTTTTCTTGTTGAACATGGTGTGGATCTTTATCAAATTGACAGGGTGATCAGCAAATTTGGAATGCCAA TGGGCCCATTCAGGTTGGCTGACCTGGTTGGGTTTGGCGTCGCAATTGCAACTGGCATGCAATTTGTTGAGAATTTCCCAGAGCGAACCTATAAATCTAT GCTTCTCCCACTAATGCAAGAGGATAAGAGAGGAGGTGAAACTACTTGCAAAGGATTCTATTTGTATGATGATAGGCGCAAAGCTAAGCCAGATCCTGAA TTAAGGAAATACATTGAGAAAGCAAGAAGCATTTCTGGTGTTGCCGTTGATCCCAAGCTTGCAAAATTACCAGAGAAGGACATTGTGGAGATGATATTCT TCCCAGTAGTGAATGAGGCTTGCCGAGTCTTTGCCGAAGGCATTGCAGTCAAAGCTGCTGACCTTGACATTGCATCTCTTATGGGAATGGGTTTTCCACC TTACAGGGGGGGCATTATGTTTTGGGCTGATTCTTTTGGATCCAAATACATTTACTCAAGATTGGAGGAATGGTCAAAGACGTATGGAGAATTCTTTGAG CCATGTGCCTTCTTGGCTGAACGAGGTGCCAAGGGTGCTCCTCTGAGTTCTCCGGTTGAGCAAGCGAAGTCTCGGCTGTAA
AA sequence Show only first row Show all	>Potri.008G220400.1 pacid=42807148 polypeptide=Potri.008G220400.1.p locus=Potri.008G220400 ID=Potri.008G220400.1.v4.1 annot-version=v4.1 MKGSRTKGTTTIEVGADGVALITLINPPVNALSSDVLNSLKDSYEQALRRDDVKAIVITGAKGKFSGGADISSFEEVQEGKVNEPKPDFIFSEVLGDTLE AAKKPSVAAIDGLALGGGLEVAMACHARISTPTAQLSLPELQLGLIPGFGGTQRLPRLVGITKALEMMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQ WALDIFECRRPWIASLYKTEKLDSLGEAREIFKFARAQAQKRAPNLLHPIVCINVVEHGIVSGPRAGLYKEFESFQELVRSDISKSLVHIFFALHGTTKV PGITDLGFVPRLVKKVAVLGGGLMGSGIATALILSNYPVILKEVNDQFLQAGIGRVRANLQSRVKKGKMTQEKFEKTMSLLKGSLDYESFKDVDMVIEAV IENVSLKQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRTKQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVN RMFFPYTQAAIFLVEHGVDLYQIDRVISKFGMPMGPFRLADLVGFGVAIATGMQFVENFPERTYKSMLLPLMQEDKRGGETTCKGFYLYDDRRKAKPDPE LRKYIEKARSISGVAVDPKLAKLPEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASLMGMGFPPYRGGIMFWADSFGSKYIYSRLEEWSKTYGEFFE PCAFLAERGAKGAPLSSPVEQAKSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.008G220400 [exp]	0	1	Pt-MFP2.3
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	3.46	0.7996	Pt-FPS1.2
AT3G63430			unknown protein		Potri.002G046700 [exp]	6.63	0.7789
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.008G107800 [exp]	9.48	0.7937	Pt-SAR1.3
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.005G116200 [exp]	11.70	0.8195	GMD1.2
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.010G183300 [exp]	17.14	0.7514
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	18.43	0.7795
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	23.23	0.7881
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	23.91	0.7501
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	30.16	0.7765	Pt-CESA4.2
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	38.24	0.7837

Compare expression of checked genes

Potri.008G220400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.