Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06868 155 / 1e-43 unknown protein AT5G49100 127 / 5e-33 unknown protein AT3G06870 75 / 2e-15 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012000 [exp] 516 / 0 AT5G49100 140 / 1e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037496 [exp] 218 / 2e-66 AT5G49100 216 / 6e-66 unknown protein Lus10006504 [exp] 189 / 3e-55 AT5G49100 221 / 5e-68 unknown protein Lus10024784 [exp] 177 / 2e-51 AT3G06868 190 / 1e-56 unknown protein Lus10001474 [exp] 109 / 2e-26 AT3G06868 194 / 1e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G220700.1 pacid=42808258 polypeptide=Potri.008G220700.1.p locus=Potri.008G220700 ID=Potri.008G220700.1.v4.1 annot-version=v4.1 ATGATGGTGGATATCAAAGGAGGTAGGGTTGGTGTAGGTGAAGAAGATATGAGTGATGGTATGCAATGTAGTGACCATCCGTACAGAAACAACCCAGGTG GGATCTGTGCCTTTTGTCTTCAAGAAAAGCTTGGCAAGCTTGTTTCTTCTTCTTTTCCTTTACCTATACGTGGTTCCTCCTCCTCCTCCTCTTCTCCTTC TTTTAGATCTGATATTGGTGTTGGTAGCTCTAGCAATGGAGGTGCAGGTACTTCACTATCATTTGCTGTGCGTCCGACAACAACAAAATGTAGAAATGAT GGTGGCAATAATAGTCACTATCAAGAATATTACACAAGGAGGGCCAGGATCCCTTTTCTTTTGGCTAAAAAGAAGAAGAAAATCATGGTATCATCATCAT CAGATCGTGATATTGTTTTCAAGAGAAGCAAATCTACTACAACTCCCAGGAGAGGCCATTTCTTGAACTCTGCTACTGATGATGGTGAGAATTTTAGCCC AAGGAGAAGAGGGTTTTGGTCATTTCTCTATCTCTCTTCCTCCAAATCTAGTACTTCAACTAGAAAAACAGAAAAGATGTCTTCTTTAGCTGCAACTACA CAACCACCACCAGCAGCAGCAGCAACAACAAATGGGTCCATGGTGAGGCCAAAAGAGAAGTGCTTAGGTTCTTCTTTGTCAAAGAAAGGTGACAATATTG TGGTAGTGGAGGATGATGATGATAGTCCTAACAGCCAAGCAACTGCCTCTGCCACCTCTTTCGAGAGAAAGGTGTCAAGGTCTAGATCCGTCGGGTGTGG AAGCAGGAGCTTCTCCGGTGACTTCTTCGAGAGAATCTCAACTGGGTTTGGTGATTGCACTCTAAGAAGAGTGGAGTCCCAGAGGGAAGGCAAGCCCGTC ACTGTTGGGACTTCTCACATGAAAGGGAGGGTGAGGTGTGGCGGTATCTTCGGTGGGTTTATCATAACCTCCTCGTCTTCCTCTTCATCATCATCCTATT GGGTTTCATCATCAGCTGAAGATATGAATGGGAAATCACCAGGAGCTGGCCCTCTTGCTCATGGTAGGAGCAGGAGCTGGGGTTGGGCTTTCGCTAGCCC AATGAGAGCTTTGGGCAGCAAACCTTCTTCAAAAGATGGGAAAAGAGACATCAATAGGAACACCACTCCAAACTTGTCTGGCATTCCTTCATTGTTAGCT GTGAGAGGCTAA
AA sequence Show only first row Show all	>Potri.008G220700.1 pacid=42808258 polypeptide=Potri.008G220700.1.p locus=Potri.008G220700 ID=Potri.008G220700.1.v4.1 annot-version=v4.1 MMVDIKGGRVGVGEEDMSDGMQCSDHPYRNNPGGICAFCLQEKLGKLVSSSFPLPIRGSSSSSSSPSFRSDIGVGSSSNGGAGTSLSFAVRPTTTKCRND GGNNSHYQEYYTRRARIPFLLAKKKKKIMVSSSSDRDIVFKRSKSTTTPRRGHFLNSATDDGENFSPRRRGFWSFLYLSSSKSSTSTRKTEKMSSLAATT QPPPAAAATTNGSMVRPKEKCLGSSLSKKGDNIVVVEDDDDSPNSQATASATSFERKVSRSRSVGCGSRSFSGDFFERISTGFGDCTLRRVESQREGKPV TVGTSHMKGRVRCGGIFGGFIITSSSSSSSSSYWVSSSAEDMNGKSPGAGPLAHGRSRSWGWAFASPMRALGSKPSSKDGKRDINRNTTPNLSGIPSLLA VRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06868			unknown protein		Potri.008G220700 [exp]	0	1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	2.00	0.9218
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	3.16	0.9173	IAA14.1
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	5.19	0.9054
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	5.29	0.9050
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	7.48	0.8750
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	11.74	0.8978
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	11.83	0.8864	Pt-BRI1.1
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	12.00	0.8944	ACR4.3
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	12.12	0.8948
AT5G10770			Eukaryotic aspartyl protease f...		Potri.016G000600 [exp]	12.24	0.8590

Compare expression of checked genes

Potri.008G220700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.