Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 1115 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G24130 52 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G49200 51 / 5e-06 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT1G24530 49 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 49 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G40880 48 / 5e-05 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT4G34380 47 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 45 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G21540 46 / 0.0003 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240100 [exp] 222 / 1e-58 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 220 / 8e-58 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 204 / 7e-53 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 67 / 7e-11 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G239600 [exp] 59 / 1e-08 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G214100 [exp] 56 / 3e-07 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.005G131100 [exp] 51 / 4e-06 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G012300 [exp] 50 / 9e-06 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.015G070900 [exp] 49 / 2e-05 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034937 [exp] 228 / 3e-60 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 218 / 2e-58 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 220 / 1e-57 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 126 / 6e-29 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 61 / 7e-09 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 58 / 6e-08 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011402 [exp] 53 / 1e-06 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 52 / 3e-06 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 51 / 6e-06 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 50 / 7e-06 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G220800.2 pacid=42808803 polypeptide=Potri.008G220800.2.p locus=Potri.008G220800 ID=Potri.008G220800.2.v4.1 annot-version=v4.1 ATGTCTAAGAGTTCTGTTTCTTGTTTTGCTAAATCCCATGATCATGAGAGACCAGATCTTGAATCCATAAGGGGAATTGTAGATTCGATCAATGAATACA TGATTGGATTCTTGGAAAATGTTGAATCTTGGAATTCTTTGAAATCACAGTGTACTTCAATGCTAAATACAATTCAAAACCAGAAGTTCTTTGAATTCTC TGAGCACTCTGTCCTCTCAAATCTTTACTGGGGAATTGAAAGCATTGAAGCTGCAATACAAGCAAAATTCCCAGAAGAGAAAACTGATCATCTCAGGAAC TCAGAAAGGTTGCTTCAGGTTCCAGCATTGCTTGATGAACATGGGGTCACAGCAGGAATTCAAAACCAGTTCTTAGTATGCTTTTCATACTTCTACCTCT CAGCCATTAAAAAGCTACAAAATGATGAGTGGCAGGTTGCGCTACATTATTTACAGGCAATGTTGGTCTCCCCTAGACTTGTTCGAACAGAATTCGCACC GGAGTTTTGTCGAGTTCTTTTTCCTCTAAGCAACAAATCTGAGATAGAGGATGAATCTTCCTGGGATTTTGGTGAGGACAATACTGATGAAGCAATCAGA CAAATTGCGAGGAGGTACAAACACTGGTTAATGTATTGTCAGATCATGTTGCATGGAGAGACTTCTGGGCACTGCAGAAGCAGAAATACTTCTTCCCCTG ATAAAGAATCACAAGATTTATCGCATGTGATGAAGAGCAGCAGTGATCTTTCGAATTCAGTTAAGCAAGGACACTGCTTGCATAATTATCATAAGAAATT AATGCAGTATGAGAAGGTGCATCCGCTTGATCTTCAAGGAAATAGAATTGAAGGCACAGCGAATGAACCTATGTCAAACGATATCCAAGAATTTCAGTAT TATAGCAATGCTCTGAAACATTTGGATCAAGTTCCAAAGGTCAACATTCAGAATGCAAACCTTGAAAAGTGTAAAAGCATCAGACGCCTTGAGGAAATAC TGATGGAAGGCGAATTGGACTCGCCAACTTCAGTAAGTTCATGCGACAGTTATGATTTGGAAGAACATAATTCAGAGGAAAATATGGATGATAGTAAAAA CTCAACAACTACTACAAGAACAGGTGTTCATGATCTGCAAGCAGAATGTTGGGATCAGATGCTGCAGGCTCCTTGTTCCACAGTGCATTCAATGTCCACA ACAAAGATTTTGCCACATGCTTCTCAGCACCGAATGCGGGAAGAAGCCAGTGAAGTAAATATAGATGACTTGTTTTCTGAAAGATTCTTAAGTTCTGTCA GCGATTTAGATTTACGTGTCTTGGAACTCGGAGGTAAAAGATCAGACATCCAGTGGAATTCCCATCTAAAAAAGTCATCTCAGAAGCTAGTTCAACACAG AGCTATAGCGACAAAACAGGACCCACATAGCCGGGAAAACTTCAATAAATTCTGTGTGCATTACAGAAGAGACTCCAGTGCTGAGTTTATAGGGGATATT GAGAAAGTAATTTCAAAACTATGTTTCTCAGAAGGTTTAGCAAAGTTTGATGAAGATTATGCTGGAGAAGTGATGACCATTTACAAAATGCTGAACAATA AAAGAGGAGTGAAGTATACTATGTTGAAAGATGTAATGCTGGATCAACTTCTGACAGCTATTTCAACTTCCAAAGAGGAAAGAGTTATAAGGGCATCGGT TTCTATACTTACAACTATCATATCGATAAACAAGTCTGCTATAGAGGACATCAAGAATAAAGGCTTGAGGCTGTGTGATTTGGCAACTGCTTTGAAGCGA AATGTGCATGAGGCCGCTATTCTTATTCATATGATAAATCCATCTCCAGCAGAAATGAAGACATTAGAACTCTTGCCAGCATTGGTTGAGGTCGTGTGCT CTTCAAACAGTTACATGGAAAGACCAGCGACACCTCTTCTGACACCTCCTGCAGCATCATTGATGATTATTGAAGTCTTGGTCACTGCATTTGACTGTGC AACTAATAACACGCACTTGGCTGCAATCAATTCTCCTCGTGTTCTTCGGGAACTCCTCAACGTCGCTGGAAATAACAATCTGGAAGGATATGTCTCCTTG GCCAATGTTATAGTAAAATGCATGCAGTTTGATGGGCAATGCAGAGAATCAGTAGCACAATGTATTCCAGTGGCTCCATTTATACGTCTACTCCAAAGTA ATGAGAAGGGTGCCAAGTTCGCAGCACTTCGGTTTTTCCATGAACTACTTCGCATGCCAAGATCACCAGCTACGAACTTATTGCAGCAGATAAGAAAAGA AGGCGGCACCAAAATTATGAAAGTATTGGTTTATTGTGTCCGAGAACTTCCAACTGATTACCAACTCTTGGCAGCAAATTTACTGCTTCAACTAGACACA TTGGAAGAATCATCTGAGAAAGGTTCATTCAAAGAAGAGGCTATACAGGTCATCCTCAAGTCAGTGGATTCTGAAGTAAGCTCTCCTACACAACAGTTAT CTGCATTCATTTTTGCAAACCTTGGAGGAACTTATGCCTGGACAGGGGAGCCATACACTGTGGCATGGCTAGTAAAAAAGGCAGGCTTGACCTCCTTGTG TCACCGAAATATGATTAGAAACTATGATTGGTTGGATCAAAACCTGCAGGATGGTGTAGTTGACTCATGGAGCAGCAAGATTGGAAAGCATGTAATTGAC GTAGGAAAACCTGTCTTCCATGCTTTAGAGAAAGGTCTAAGGAGTAAGGCAAAGAGGGTTTCTCGGGACTCTCTCACCGCAATTGCATGGATTGGATTTG AAATTGCAAGGTGTCCTACTAGCCTAAGATATTCTGCGTGTGAGATCTTGCTTGGTGGAATAGAGCAATTTCTGCACCCTGGATTGGAGCTTGAAGAAAG ACTTCTGGCATGTTTGTGCATCTATAACTATGCTTCCGGAAGAGGGATGCAGAAACTAATTCATTTCTCCGAAGGAGTACGGGAATCGCTGAGACGTTTC TCAGGAGTAACCTGGATGGCAGATGAACTGCATAGAGTAGCTGACTATTATTTGCCCAACCAATCGCGTATTTCCTGCGTTCACACACAAATTTTGGAGG CAAGTGATAGCAGCAGCGGAGCCATAACTTCCCTCATCTACTACAAGGGACTGCTTTATAGTGGACATTCAGATGGTTCAATCAAGGTTTGGGACATCAA ACAGCAGTCAGCCACAATTATATGGGACTTGAAAGAGCATAAAAAAGCAGTGACATGTTTTTCACTCTTTGAAGCAGGGGAGAGCCTTCTGAGTGGATCT TCTGACAAAACCATTAGGGTTTGGAAAATGGTACAAAGGAAACCGGAGTGCACTGAAGTCATAGCTATGGAGGAACCGATTCGACAGTTAGAAAAATATG ACCAAATGATTTTTGTTATCACCCAAGGCCACAGAATGAAGGTCTATGATTCATCAAGAACAGCCAGAGACATCTGTAAGGCTAAGAAGGTGAAGAGCAT GAGAGTGGTCCAGGGAAAGATTTACATAGGCTGCAAAGATTCAAGCATACAGGAATTAACCATAGCAACTAAGAGGGAGCAGGAGATCAAGGCACCAACA AAGAGTTGGATAATGCAAAAGAAACCCATCAATGCAATTGTTGTCTACAGAGATTGGCTTTATAGTGCAAGTTCAGTCATCGAGGGTTCAAAAGTTAAGG AATGGAGAACACATCATAAGCCCCGTATATCTATAGCAGCAGACAAGGGCAGGAATGTGTTACTAATGGGAGTAGTGGAAGACTTCATCTACTTAAATTC CTCCTCGTCAACCAGCACCCTTCAGATTTGGTTAAGAGGGATGCAACAGAAAGTGGGCAGGATTTCTGCAGGCAGCAAAATAACAAGCCTTCTTACTGCC AATGACATGGTTCTATGTGGAACTGAGAAAGGACTGATTAAGGGCTGGATACCACTCTAG
AA sequence Show only first row Show all	>Potri.008G220800.2 pacid=42808803 polypeptide=Potri.008G220800.2.p locus=Potri.008G220800 ID=Potri.008G220800.2.v4.1 annot-version=v4.1 MSKSSVSCFAKSHDHERPDLESIRGIVDSINEYMIGFLENVESWNSLKSQCTSMLNTIQNQKFFEFSEHSVLSNLYWGIESIEAAIQAKFPEEKTDHLRN SERLLQVPALLDEHGVTAGIQNQFLVCFSYFYLSAIKKLQNDEWQVALHYLQAMLVSPRLVRTEFAPEFCRVLFPLSNKSEIEDESSWDFGEDNTDEAIR QIARRYKHWLMYCQIMLHGETSGHCRSRNTSSPDKESQDLSHVMKSSSDLSNSVKQGHCLHNYHKKLMQYEKVHPLDLQGNRIEGTANEPMSNDIQEFQY YSNALKHLDQVPKVNIQNANLEKCKSIRRLEEILMEGELDSPTSVSSCDSYDLEEHNSEENMDDSKNSTTTTRTGVHDLQAECWDQMLQAPCSTVHSMST TKILPHASQHRMREEASEVNIDDLFSERFLSSVSDLDLRVLELGGKRSDIQWNSHLKKSSQKLVQHRAIATKQDPHSRENFNKFCVHYRRDSSAEFIGDI EKVISKLCFSEGLAKFDEDYAGEVMTIYKMLNNKRGVKYTMLKDVMLDQLLTAISTSKEERVIRASVSILTTIISINKSAIEDIKNKGLRLCDLATALKR NVHEAAILIHMINPSPAEMKTLELLPALVEVVCSSNSYMERPATPLLTPPAASLMIIEVLVTAFDCATNNTHLAAINSPRVLRELLNVAGNNNLEGYVSL ANVIVKCMQFDGQCRESVAQCIPVAPFIRLLQSNEKGAKFAALRFFHELLRMPRSPATNLLQQIRKEGGTKIMKVLVYCVRELPTDYQLLAANLLLQLDT LEESSEKGSFKEEAIQVILKSVDSEVSSPTQQLSAFIFANLGGTYAWTGEPYTVAWLVKKAGLTSLCHRNMIRNYDWLDQNLQDGVVDSWSSKIGKHVID VGKPVFHALEKGLRSKAKRVSRDSLTAIAWIGFEIARCPTSLRYSACEILLGGIEQFLHPGLELEERLLACLCIYNYASGRGMQKLIHFSEGVRESLRRF SGVTWMADELHRVADYYLPNQSRISCVHTQILEASDSSSGAITSLIYYKGLLYSGHSDGSIKVWDIKQQSATIIWDLKEHKKAVTCFSLFEAGESLLSGS SDKTIRVWKMVQRKPECTEVIAMEEPIRQLEKYDQMIFVITQGHRMKVYDSSRTARDICKAKKVKSMRVVQGKIYIGCKDSSIQELTIATKREQEIKAPT KSWIMQKKPINAIVVYRDWLYSASSVIEGSKVKEWRTHHKPRISIAADKGRNVLLMGVVEDFIYLNSSSSTSTLQIWLRGMQQKVGRISAGSKITSLLTA NDMVLCGTEKGLIKGWIPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.008G220800 [exp]	0	1
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	3.74	0.8233
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	4.00	0.7805
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010200 [exp]	4.47	0.7755
					Potri.003G204475 [exp]	4.89	0.8026
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.017G068500 [exp]	5.29	0.7963
					Potri.002G068501 [exp]	15.81	0.7961
AT1G25425		CLE43	CLAVATA3/ESR-RELATED 43 (.1)		Potri.010G124900 [exp]	22.58	0.7354
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	23.81	0.7771
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.006G234200 [exp]	30.16	0.6746
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.003G157001 [exp]	31.74	0.7819

Compare expression of checked genes

Potri.008G220800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.