Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16640 228 / 2e-77 TCTP translationally controlled tumor protein (.1) AT3G05540 221 / 8e-75 Methionine sulfoxide reductase (MSS4-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013400 [exp] 250 / 2e-86 AT3G16640 217 / 5e-73 translationally controlled tumor protein (.1) Potri.005G024800 [exp] 247 / 3e-85 AT3G16640 284 / 8e-100 translationally controlled tumor protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002877 [exp] 232 / 5e-79 AT3G16640 256 / 2e-88 translationally controlled tumor protein (.1) Lus10033959 [exp] 232 / 5e-79 AT3G16640 256 / 2e-88 translationally controlled tumor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [poplar] [flax] Beta-tent PF00838 [poplar] [flax] TCTP Translationally controlled tumour protein
Representative CDS sequence Show only first row Show all	>Potri.008G221200.1 pacid=42807669 polypeptide=Potri.008G221200.1.p locus=Potri.008G221200 ID=Potri.008G221200.1.v4.1 annot-version=v4.1 ATGTTGGTCTATCAAGATCTTCTCTCTGGTGATGAGCTTCTCTCGGACTCGTTCCCCTACAAGGAAATTGAGAATGGGATACTGTGGGAAGCTGAAGGAA AGTGGGTTGTTCAAGGAGCTGTCGACGTAGACATTGGCGCTAATCCTTCTGCTGAAGGAGGCGATGAGGATGAAGGTGTTGATGACCAAACTGTCAAGGT GGTTGACATTGTTGACACGTTTAGGCTCCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTTACTTATATGAAGAGATTTATCAAGTTGTTGTCGGAG AAACTCGATGACGAAAACAAAGAACATTTTAAGAAAAACATTGAGGGAGCCACCAAGTTCTTGCTTTCGAAGATCAAGGACTTCCAATTCTTTGTGGGGG AGAGCATGCATGATGATAGTGCTTTGGTCCTTGCTTACTACAAAGAAGGTGCCACCGATCCAACGTTTTTGTACTTTGGTCATGCTTTGAAGGAGGTCAA GTGCTAA
AA sequence Show only first row Show all	>Potri.008G221200.1 pacid=42807669 polypeptide=Potri.008G221200.1.p locus=Potri.008G221200 ID=Potri.008G221200.1.v4.1 annot-version=v4.1 MLVYQDLLSGDELLSDSFPYKEIENGILWEAEGKWVVQGAVDVDIGANPSAEGGDEDEGVDDQTVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLSE KLDDENKEHFKKNIEGATKFLLSKIKDFQFFVGESMHDDSALVLAYYKEGATDPTFLYFGHALKEVKC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16640		TCTP	translationally controlled tum...		Potri.008G221200 [exp]	0	1
AT1G47820			unknown protein		Potri.014G121300 [exp]	2.00	0.8515
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	4.24	0.8190	Pt-RPL19.3
AT3G60480			unknown protein		Potri.014G054300 [exp]	6.32	0.8116
AT1G07830			ribosomal protein L29 family p...		Potri.014G111100 [exp]	6.92	0.7723
AT2G18110			Translation elongation factor...		Potri.009G018600 [exp]	7.93	0.7830
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	12.00	0.7837
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.017G037000 [exp]	13.41	0.7249	MYB174
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	13.78	0.7868	Pt-TCTP.2
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.005G078400 [exp]	15.90	0.7461
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.017G133501 [exp]	17.88	0.6687

Compare expression of checked genes

Potri.008G221200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.