Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16630 1167 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G16060 579 / 0 ATP binding microtubule motor family protein (.1) AT3G49650 193 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18550 192 / 2e-51 ATP binding microtubule motor family protein (.1) AT5G47820 180 / 1e-46 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 174 / 2e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 169 / 1e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15885 150 / 9e-43 kinesin motor protein-related (.1) AT5G65930 167 / 3e-42 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT2G28620 165 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013500 [exp] 1464 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 859 / 0 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.018G079800 [exp] 625 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G182300 [exp] 598 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.003G053800 [exp] 592 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.012G058400 [exp] 188 / 9e-50 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.002G123500 [exp] 179 / 3e-46 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 179 / 4e-46 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 179 / 4e-46 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023103 [exp] 1198 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10002876 [exp] 1189 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037546 [exp] 587 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 570 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 215 / 2e-59 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 213 / 9e-58 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 176 / 3e-45 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 176 / 4e-45 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010047 [exp] 173 / 3e-44 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 169 / 4e-43 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.008G221400.1 pacid=42807895 polypeptide=Potri.008G221400.1.p locus=Potri.008G221400 ID=Potri.008G221400.1.v4.1 annot-version=v4.1 ATGGGCGGCCAGATGCAGCAAACCAATGCTGCTGCTGCTGCTGCTACTGCAACCGCACTTTATGATCATGCCGGCGCTGGTGGGTCCTTGGGTCCCACTA GTGATGCTGGCGATGCGGTTATGGCTAGGTGGCTTCAGTCTGCCGGCTTGCAGCATCTGGCCTCTCCCATGGCTTCTACCGGCATCGATAATCGCCTCCT CCCTAATATTTTAATGCAGGGTTATGGAGCGCAATCTGCGGAAGAGAAACAGAGGCTTTTCAAGCTTATGAGAAACCTCAATTTCAATGGAGAGTCTGTT CCCGAGTCTTACACCCCAACTGCCCAAACTTCAGCTGGTGTTTCTTCCTCGGATGGCTTTTATTCTCCAGAGTTTAGGGGCGATTTTGGAGCTGGGCTTT TGGATCTTCATGCTATGGATGATACAGAGCTTCTATCTGAGCATGTCATCCCAGAACCATTTGATCCATCACCATTGATGCCTGGTGCTTCAAAAGGATT TGAAAATGATTTCAACGTGAATAGTAGCAGACAACAAAGAGAGCAAACTGATGCAGATTTGTCAGTTCCGTTCCCTACTAATGAAAAAGAGAACAGCTCA AAGGAAAATAATGTGGCTAAAATTAAAGTTGTGGTACGTAAAAGACCGCTGAACAAGAAAGAGCTTGCTAGGAAGGAGGATGACATTGTAACCGTGTATG ACAATGCTTTGACTGTCCATGAGCCCAAGCTAAAGGTGGATTTGACTGCATATGTCGAGAAGCATGAGTTCTGTTTTGATGCTGTTCTAGATGAGCGGGT CACCAATGATGAGGTATATCGGGTTACTGTGGAACCAATCATCCCCACCATTTTTCAGCGAACAAAAGCCACATGTTTTGCATATGGTCAGACAGGTAGT GGTAAGACATTCACAATGCAGCCCCTGCCTCTTAGAGCTGCTGAAGACCTTGTTAGATTGTTGCGTCAGCCAGTTTATCATAATCAGAGATTCAAATTGT GGCTTAGCTTTTTTGAAATATATGGTGGAAAACTCTTCGATCTTCTCAGTGAAAGAAAGAAACTTTGTATGAGAGAAGATGGTAGGCAACAAGTTTGCAT TGTTGGACTGCAAGAATTTGAAGTTTCTGATGTACAAATTGTCAAGGAATATATTGAGAGGGGGAATGCTGCCAGAAGTACAGGATCTACTGGTGCCAAT GAAGAATCTTCAAGATCACATGCTATTTTACAACTCGCCGTTAAGAAGCACAGCGAAGTAAAGGACTCCAGGAGGAACAATGATGTGAATGAGTCTAAAA GTGGAAAAGTAGTTGGGAAAATTTCATTTATTGATCTTGCTGGCAGTGAACGAGGCGCAGACACCACTGACAATGACCGGCAAACAAGGATTGAAGGTGC AGAAATCAACAAGAGCCTTTTGGCTCTCAAGGAGTGCATTCGTGCTCTGGACAATGACCAGATCCATATACCATTCCGAGGGAGCAAGCTCACAGAAGTA CTCCGTGATTCTTTCGTGGGCAACTCTAGGACAGTTATGATCTCTTGCATATCCCCAAATGCCGGCTCATGTGAACATACACTCAATACATTGAGATATG CAGATAGGGTTAAAAGTCTTTCTAAAAGTGGAAATGCAAAAAAGGATCAGGCTGTAAGTTCATTACCACCAACTAATAAGGATGCTTCCTCTACATCATC TCTGCCAGTCTCTGCTGATGTTGATGGTGTTTATGAGCAACAAGAGGTCAAAGTGCCAGATATGGGTAGAAGGGTTGTGGAAAAAGAAACTCCATCCTTC AATCATACTGTTGATTATGATAAACAGCCCTCAAGTTTTACATCAGGTTTTTCATACAACGGACGAGAAGAAAGCGGGTTGACTTCTGGCTTAGCAGACA GGGAGAGGTATGAAAGTAACAGTTCCTTTGGTGGCTTGACTAGTCAAAAGGTCCATTCATTGTACACCCAGCACTCAGTTGATACAGAAGAGAAAGCGCC GAAGGTGTCACCAACCCGCAGAAAAGGATCCAGAGAAGAAAAATCAGAAAAATCAGGGAACTGGTTGAAAAAAGATGGCAGTGGACCTGATCTCCCCACT GGAAATTCGAAGCAGCAGAATACAGGAAACTTTAGTGCAGGTAACACTGGACCTCGACAGTATGAACCTTATCCTCCCCCTGATGGGAATATAAATGCAA TACTAGAGGAAGAAGAGGCCCTAATCGCTGCTCATAGAAAAGAAATAGAGGATACAATGGAGATTGTTCGTGAAGAAATGAAACTGTTGGCGGAAGTTGA CCAACCAGGCAGTCTGATTGACAACTATGTGACCCAGTTGAGCTTTGTGCTCTCGCGCAAAGCGGCTGGCCTGGTTAGCCTTCAAGCACGCCTTGCTAGG TTCCAGCATCGACTAAAGGAACAGGAGATACTTAGTCGGAAGAGAGTTCCTCGTTAA
AA sequence Show only first row Show all	>Potri.008G221400.1 pacid=42807895 polypeptide=Potri.008G221400.1.p locus=Potri.008G221400 ID=Potri.008G221400.1.v4.1 annot-version=v4.1 MGGQMQQTNAAAAAATATALYDHAGAGGSLGPTSDAGDAVMARWLQSAGLQHLASPMASTGIDNRLLPNILMQGYGAQSAEEKQRLFKLMRNLNFNGESV PESYTPTAQTSAGVSSSDGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVIPEPFDPSPLMPGASKGFENDFNVNSSRQQREQTDADLSVPFPTNEKENSS KENNVAKIKVVVRKRPLNKKELARKEDDIVTVYDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGS GKTFTMQPLPLRAAEDLVRLLRQPVYHNQRFKLWLSFFEIYGGKLFDLLSERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIERGNAARSTGSTGAN EESSRSHAILQLAVKKHSEVKDSRRNNDVNESKSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEV LRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDQAVSSLPPTNKDASSTSSLPVSADVDGVYEQQEVKVPDMGRRVVEKETPSF NHTVDYDKQPSSFTSGFSYNGREESGLTSGLADRERYESNSSFGGLTSQKVHSLYTQHSVDTEEKAPKVSPTRRKGSREEKSEKSGNWLKKDGSGPDLPT GNSKQQNTGNFSAGNTGPRQYEPYPPPDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLSFVLSRKAAGLVSLQARLAR FQHRLKEQEILSRKRVPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	0	1
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	4.24	0.9195
AT1G63300			Myosin heavy chain-related pro...		Potri.003G124600 [exp]	5.19	0.9168
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	6.32	0.8872
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	6.48	0.8860
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	7.34	0.8860
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	14.83	0.8814
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	15.16	0.8372	ATHB.11
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.014G068400 [exp]	17.23	0.8788	Pt-GAE2.1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	18.30	0.8861	OMT1.1
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	18.49	0.8700	Pt-SPL7.2

Compare expression of checked genes

Potri.008G221400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.