Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ESD4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15880 436 / 2e-149 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 382 / 8e-128 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT4G00690 290 / 3e-94 ULP1B UB-like protease 1B (.1) AT1G10570 81 / 5e-16 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 71 / 1e-12 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G09730 52 / 8e-07 Cysteine proteinases superfamily protein (.1.2) AT4G33620 44 / 0.0002 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013700 [exp] 687 / 0 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.017G148266 [exp] 83 / 1e-16 AT2G01570 196 / 4e-54 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G070500 [exp] 74 / 1e-13 AT1G14920 191 / 7e-53 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.010G040600 [exp] 66 / 2e-11 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.002G105700 [exp] 66 / 4e-11 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 62 / 7e-10 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.017G018801 [exp] 59 / 5e-09 AT2G01570 218 / 3e-60 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G019466 [exp] 52 / 1e-06 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G044000 [exp] 50 / 3e-06 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023104 [exp] 498 / 4e-173 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 493 / 1e-170 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 61 / 2e-09 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10030622 [exp] 58 / 1e-08 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030867 [exp] 55 / 1e-07 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10020445 [exp] 52 / 1e-06 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.008G221500.1 pacid=42806228 polypeptide=Potri.008G221500.1.p locus=Potri.008G221500 ID=Potri.008G221500.1.v4.1 annot-version=v4.1 ATGGGTGCTTTAACGAGTAGTGGTAACCACAAAAGAGATCACCCATGTAATTATAACCCATATTCAAATTCTCCAGATTTTCACGTCTCTAAAAAGCCCA GATTCTCTACCATGCATCAAACCCGTAAATTCAACAACCAAACCCTAGGTTCTTCTAACAGTATTGCCTCTAGAATCTCTAAGTACCCAGAAACAGCTAC GAAGTTTCGCCGAGAGGTTCATGCCCCTTGTAGTTTTCAGAAATTTACCTTGTCCAGGGTTAAAAGTGGTGGTTTTAGCGAAAAGGAGAGAAATCTTGGT CGTGAAGGTGATGTAATGGGGAATTTCTTGAGTAGCAAGTTGGATTATGCGAAACAAAGCGCGTTTGGTGCGATTAGATATTTGGTCAAAGAGAAAGAAG TGATTGATGTTGATGATGAGAATGAGAAGATTGAGAAAGAAATTGTGTCTGAGGATTCTAGTATTGAAGAAGTTGAGGCTTTCGAAGAGGATGGAAGAGA GGGAGGGTCTGCGGTTTTGAACTGGATGTTGCGAAATGGGGTTGTGGGCAGTGAGAATGATGGTGATGTTAAAATTTTGGAGGAGAGATCAGTGGTTACT ATTGATGGGAATTTAGGTGTGGAGAATACAGGGAAGATGTTGGGTTCATTGGCATTGAATAATGAATTTGGGGTTTTGACTGTTGAGACTTACAAGAAGT TGTTGGAGGATACAGAGAGGAGGAACGGGAGGTTGGGATCATTGAAATTTGAGATTGAGTACAATGAGAAAAGGCGGGATTCATTTAAGGCCTTGCGACC TGTGAAGAAGGAACCTGTGGAGAAGATATCGCGAGAGCCTTTTATCCCTCTCACACCTGAGGAAGAAACCGAGGTTAAACAAGCATTTTTTCCCAACAAT AGGAGGAGGGTCTTGGTCAGTCATGGAAATTCCAATATTGATATTACTGGACAAATTTTGCACTGCCTTGCACCAGGAGCATGGTTGAATGATGAGGTCA TAAATTTGTATATGGATTTGCTTAAAGAAAGGGAAAGGAGAGAACCGAAGAAGTTCCTAAAATGTCATTTTTTCAATACCTTTTTTTACAAAAAGTTAAC AGGTGGAGGTAAGGGTGGCTATGATTATAGAGCTGTCAAAAGATGGACCACAGAAAAAAAGTTGGGATATTTCTTGATTGACTGTGACAAAATATTTGTC CCTGTTCACCAAGAGATACATTGGTGTTTGGCAGTCATTAACAAAAAGGATCAGAAGTTCCAGTATCTTGATTCACTCAAAGGAAGGGACAACAGAGTTC TTGAAAGTTTGGCTAAATACTATGCTGAAGAAGTTAAAGACAAGAGTAAGAAAGACATTGATGTAAGTAATTGGGAGCGTGAATTTGTTGAAGACCTTCC TGAACAACAGAATGGGTATGACTGTGGTGTGTTTATGATCAAGTATGCTGATTTTTATAGCAGAGGTATAGGGCTTTGTTTTGGCCAGGAGCACATGCCC TATTTTCGGTTGAGGACAGCCAAGGAAATTCTGAGATTGAGAGCTGACTGA
AA sequence Show only first row Show all	>Potri.008G221500.1 pacid=42806228 polypeptide=Potri.008G221500.1.p locus=Potri.008G221500 ID=Potri.008G221500.1.v4.1 annot-version=v4.1 MGALTSSGNHKRDHPCNYNPYSNSPDFHVSKKPRFSTMHQTRKFNNQTLGSSNSIASRISKYPETATKFRREVHAPCSFQKFTLSRVKSGGFSEKERNLG REGDVMGNFLSSKLDYAKQSAFGAIRYLVKEKEVIDVDDENEKIEKEIVSEDSSIEEVEAFEEDGREGGSAVLNWMLRNGVVGSENDGDVKILEERSVVT IDGNLGVENTGKMLGSLALNNEFGVLTVETYKKLLEDTERRNGRLGSLKFEIEYNEKRRDSFKALRPVKKEPVEKISREPFIPLTPEEETEVKQAFFPNN RRRVLVSHGNSNIDITGQILHCLAPGAWLNDEVINLYMDLLKERERREPKKFLKCHFFNTFFYKKLTGGGKGGYDYRAVKRWTTEKKLGYFLIDCDKIFV PVHQEIHWCLAVINKKDQKFQYLDSLKGRDNRVLESLAKYYAEEVKDKSKKDIDVSNWEREFVEDLPEQQNGYDCGVFMIKYADFYSRGIGLCFGQEHMP YFRLRTAKEILRLRAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.008G221500 [exp]	0	1	Pt-ESD4.1
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	3.46	0.8551
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	5.65	0.8040
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	9.48	0.7607
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	14.96	0.7235
AT5G53440			unknown protein		Potri.015G014800 [exp]	16.61	0.7969
AT5G53930			unknown protein		Potri.011G115900 [exp]	21.84	0.7660
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	24.53	0.7664
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.009G155500 [exp]	25.25	0.7589
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	31.93	0.7735
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.001G372600 [exp]	32.86	0.6566

Compare expression of checked genes

Potri.008G221500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.