Plant FIBer expression Database

Potri.008G221700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15830 318 / 6e-109 ARM repeat superfamily protein (.1)
AT3G01450 189 / 5e-58 ARM repeat superfamily protein (.1)
AT5G14790 182 / 5e-55 ARM repeat superfamily protein (.1)
AT3G18530 87 / 3e-19 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G221900
[exp]
401 / 5e-142 AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1)
Potri.010G014200
[exp]
389 / 4e-137 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034168
[exp]
341 / 5e-118 AT4G15830 290 / 5e-98 ARM repeat superfamily protein (.1)
Lus10043416
[exp]
339 / 4e-117 AT4G15830 291 / 2e-98 ARM repeat superfamily protein (.1)
Lus10032152
[exp]
184 / 4e-56 AT5G14790 324 / 3e-110 ARM repeat superfamily protein (.1)
Lus10014533
[exp]
184 / 6e-56 AT5G14790 323 / 2e-109 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF12348 CLASP_N CLASP N terminal
Representative CDS sequence
>Potri.008G221700.1 pacid=42807244 polypeptide=Potri.008G221700.1.p locus=Potri.008G221700 ID=Potri.008G221700.1.v4.1 annot-version=v4.1
ATGGCACTGAGACCCATTGATAATTCACTTCCAATAGCACCAGAGAGACCCAAAAAACATGTGAAAGTAGTTTCTGTTCCAATTCAAAAACAATCAGAGG
TTGGTGTAAATGATGAAAACAAGGCTCCTTTGCCGGATTCCACTATTGATTATATCTCTTCTGATGATCTCAAACCCATTTCTGATCCTGAATCCAAGAT
CCAAGGTTTGATTGAAAGGTTAGATTCAAAGGATTGGACTAAAGTTTGTGAGTCACTGAATAATGCTAGGCGTTTTGCACTGTATCATTCCTCCCTCCTG
TTACCATTCTTGGAAAAGGTAATGTCAGTGGTGGTAAAAGCTATGAAGAACCCGAGAAGTGCTTTGATCAAGACCTCTATTATGGCTTCATCTGATATTT
TTTATGCCTTTGGTGACCAATTACTTGACTCTACTAGCGATGCATTTGATAGTTTGCTATTGCAGCTGCTGCTTAAAGCTTCTCAAGACAAAAAGTTTGT
GTGTGAAGAAGCTGATAGGGCTTTGAATGCATTGGTGAAATCCATGACTCCTCTGCCTTTGCTTAATAAGCTTAAGCTATATGTTAGCCATGTCAACCTT
AGAATCAGGGCCAAAGCTGCTATATCCATCTCCAACTTTGTGTCTAAGATGGAGTTGGAAGGAATGAATGAGTTTGGTTTGGTTTCTTTGGTTCAAGTGG
CTGCAGATCTGTTGAATGATAGGCTGCCAGAGGCAAGAGAGGCGGCAAGGAGAACTGTGATTTCTATATATGAAGCATATACAGGAAATGAAGAGCAGAA
GCAGGAGGAATGGCAAAACTTTTGCCAATCCAGTTTGCCACCTATTCATGCCCAGTCTATTGTCAAAATTACATCTAGTTCTCGTTAG
AA sequence
>Potri.008G221700.1 pacid=42807244 polypeptide=Potri.008G221700.1.p locus=Potri.008G221700 ID=Potri.008G221700.1.v4.1 annot-version=v4.1
MALRPIDNSLPIAPERPKKHVKVVSVPIQKQSEVGVNDENKAPLPDSTIDYISSDDLKPISDPESKIQGLIERLDSKDWTKVCESLNNARRFALYHSSLL
LPFLEKVMSVVVKAMKNPRSALIKTSIMASSDIFYAFGDQLLDSTSDAFDSLLLQLLLKASQDKKFVCEEADRALNALVKSMTPLPLLNKLKLYVSHVNL
RIRAKAAISISNFVSKMELEGMNEFGLVSLVQVAADLLNDRLPEAREAARRTVISIYEAYTGNEEQKQEEWQNFCQSSLPPIHAQSIVKITSSSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15830 ARM repeat superfamily protein... Potri.008G221700
[exp]
0 1
AT2G17620 CYCB2;1 Cyclin B2;1 (.1) Potri.005G100000
[exp]
2.00 0.9800 Pt-CYCMS1.1
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.009G040200
[exp]
2.44 0.9829
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.005G142200
[exp]
2.64 0.9745
AT1G08560 KN, ATSYP111, S... KNOLLE, syntaxin of plants 11... Potri.013G053200
[exp]
3.00 0.9704 Pt-SYP111.1
AT2G42110 unknown protein Potri.006G192500
[exp]
3.16 0.9785
AT5G45700 Haloacid dehalogenase-like hyd... Potri.004G062900
[exp]
4.47 0.9682
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.006G035200
[exp]
6.48 0.9750
AT3G51740 IMK2 inflorescence meristem recepto... Potri.006G104300
[exp]
6.78 0.9514 Pt-RHG1.3
AT1G76540 CDKB2;1 cyclin-dependent kinase B2;1 (... Potri.005G257500
[exp]
8.77 0.9643 CDKB2.2
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.016G033000
[exp]
9.38 0.9713

Potri.008G221700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.