Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1) AT3G01450 207 / 2e-65 ARM repeat superfamily protein (.1) AT5G14790 202 / 6e-63 ARM repeat superfamily protein (.1) AT3G18530 107 / 1e-26 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014200 [exp] 454 / 3e-163 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1) Potri.008G221700 [exp] 385 / 1e-135 AT4G15830 318 / 5e-109 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034168 [exp] 319 / 2e-109 AT4G15830 290 / 5e-98 ARM repeat superfamily protein (.1) Lus10043416 [exp] 313 / 6e-107 AT4G15830 291 / 2e-98 ARM repeat superfamily protein (.1) Lus10032152 [exp] 209 / 4e-66 AT5G14790 324 / 3e-110 ARM repeat superfamily protein (.1) Lus10014533 [exp] 208 / 2e-65 AT5G14790 323 / 2e-109 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12348 [poplar] [flax] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Potri.008G221900.1 pacid=42807088 polypeptide=Potri.008G221900.1.p locus=Potri.008G221900 ID=Potri.008G221900.1.v4.1 annot-version=v4.1 ATGGCACTGAAACCCATTGACAACGCTCTTCTACTGCCACCAGAAACTATCAAATTGGGTGTAAATGAAGAAAACAAGACAGCTGAATCATTGCCTCCTT CTGCAGATCCGATTATTGATTACATCTCGTCTGAGAATCTTGAACCCATTTCAGATCCTGAATCCAAGATCCATGGTTTAGTAGAGGAGTTAGATTCAAA GGATTGGACAAAGGTTTGCGAGTCATTGAATGATGTTAGGAGATTTGCACTCTATCATTCGTTGCTCTTGCTGCCAATCTTGGAAAAAGTAATTTTAGTA GCGGTGAAAGCTATGAAGAATCCAAGAAGTGCTTTGTGCAAGACATCTATCATGGCTTCATCTGATATTTTCAAGGTCTTTGGTGACCAGTTGCTTGACT CTACTATTAATGCATTTGATAACTTGCTGTTGCAACTACTACTGAAAGCTTCTCAAGACAAAAGGTTTGTGTGTGAAGAAGCAGATAGAGCACTGAATGC AATGGTGAAATCCATGACTCCTCTGCCTTTGCTCAACAAGCTCCGGCCTTATGTTAGCCATTCCAACCCCAAAGTCAGGGCCAAAGCTGCCATAACTATC TCTAAATCTGTCTCCAAGATGGGACTGGAAGGAATGAATGAGTTTGGATTGGTTTCGCTGGTTCAAATGGCTGCAGATTTGTTGAATGATAGGCTGCCCG AGGCAAGAGAAGCGGCAAGGAACATTGTGACTTCTATATATGAAGCATATACCAGAAACGAGGAGCAGAAGCAGGAATCATGGCAAAACTTTTGCCAATC CAGTTTGCCACCCATTCATGCTCAGTCAATGGTCAAAATTACTGGTTCTCCATAA
AA sequence Show only first row Show all	>Potri.008G221900.1 pacid=42807088 polypeptide=Potri.008G221900.1.p locus=Potri.008G221900 ID=Potri.008G221900.1.v4.1 annot-version=v4.1 MALKPIDNALLLPPETIKLGVNEENKTAESLPPSADPIIDYISSENLEPISDPESKIHGLVEELDSKDWTKVCESLNDVRRFALYHSLLLLPILEKVILV AVKAMKNPRSALCKTSIMASSDIFKVFGDQLLDSTINAFDNLLLQLLLKASQDKRFVCEEADRALNAMVKSMTPLPLLNKLRPYVSHSNPKVRAKAAITI SKSVSKMGLEGMNEFGLVSLVQMAADLLNDRLPEAREAARNIVTSIYEAYTRNEEQKQESWQNFCQSSLPPIHAQSMVKITGSP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15830			ARM repeat superfamily protein...		Potri.008G221900 [exp]	0	1
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	2.44	0.9273
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	2.44	0.9290
					Potri.015G069150 [exp]	3.87	0.9153
AT5G57815			Cytochrome c oxidase, subunit ...		Potri.018G099900 [exp]	7.07	0.9034
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.005G242000 [exp]	7.48	0.9045	Pt-RAC4.2
					Potri.006G112400 [exp]	8.12	0.9050
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	8.66	0.9081
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	10.39	0.9110
AT1G34350			unknown protein		Potri.019G085500 [exp]	10.39	0.9040
AT3G05725			Protein of unknown function (D...		Potri.005G019900 [exp]	17.54	0.8745

Compare expression of checked genes

Potri.008G221900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.