Plant FIBer expression Database

Potri.008G222000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15820 156 / 1e-41 unknown protein
AT3G61780 59 / 7e-09 EMB1703 embryo defective 1703 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G099100
[exp]
66 / 8e-11 AT3G61780 805 / 0.0 embryo defective 1703 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043415
[exp]
300 / 1e-94 AT4G15820 199 / 9e-58 unknown protein
Lus10034169
[exp]
288 / 4e-90 AT4G15820 204 / 2e-59 unknown protein
Lus10004004
[exp]
62 / 9e-10 AT3G61780 671 / 0.0 embryo defective 1703 (.1)
PFAM info
Representative CDS sequence
>Potri.008G222000.1 pacid=42806536 polypeptide=Potri.008G222000.1.p locus=Potri.008G222000 ID=Potri.008G222000.1.v4.1 annot-version=v4.1
ATGCCCCTCCTCCATCGCCCTGCCATGGCGGGTACGCCTTGCGCCACCTTCACTTTCCTCTCAATCTCCACAATCTCAATCCCAGACGCCAACCCTCACA
GATTTCGTCTGAAACCACTCCTCTGTTCCACTACTTCCACTTCATTCCCATCAAAACGCATAAAGAGGAAAAACCACTTACGTCCCAAAATCCTAAAAAC
CCTAACTAAACCCTTCCCTACCGCACCTCTACCCCAAATAGAAACAACCCCAATTCAGAACGACACCTTTTACGACACCCCTTTGAAGGAAACCCTATCA
AGTGAAGAATTAGAGGCTGACACAGTTGATGAATTTAATGTCTCAGAGACTGTTAGCTCAGCAGTAGAACACAGTGGCAGTGTTGGTAAATTATCTGTGA
AGTCTGTCTTGAAATATAGCGGTTATTTTCTTGGGGTTTTGTTGTTTCAAACAATTTGTGCTGTTTGGTTATTTGGAAATACTGATTCTGATGGAAAAGA
AAGGAATTTTAACGAGAAAGGGAATGTTTTATTGGATGTGAATGGAAATGAGGTTTATGTTAATGAGAGTGAATTGGAAGAGAAAATCAGTGAAATTAAG
GTAATGGCGAGAGAAGCGAGAAAGAGGGAGAGGAGGGAGTTAATTGAGGGTGATAAAGGGAGTGAGCTTGAGAAGGAGATTGGTGCGCGATTGGTTAAGT
TGGAGAAGAGGTTGAACTCGAAGAGAGAGAAGTTGCCGGATTCGTTCATGGAGTATTTGGGGTTGTTTGGGGATTTTGAGGATGGTTATGGTGAGGATGC
TTCGGATTCAAAAGAGGAAAATAAGACGTTGACGTTTAAAAAGAAGTTAAGGTTTAAGAGTCCGTCAATGGATGCGAGGAGTGCTCCAAAAGGTTTTTCG
GGTTTGAAGGATGATAGTGGTTCTAATATAAGTGATCTGAATGGCGTGTCTAGAAAAACTGATGTGAGGTATTTGAAAAAGGACACCGGAGGGAAACATG
GGAACGTGCAGTTGAATTCAGTGAAAAATGAGGGAAACAAATTTGAGAAGAAAAGGGCGAATTTGCGAAAGGAAATGGGATCTGGCACTGTCCAGAAGAT
CAGGGAAGGAAGGTCTTCAAATGAAGTTCCAGATGCAGGAAAATCAAGAGATTTGGAGACCCTAAATTCTGAAAGCTCGACCAAAGAAAACCAGGAAACC
ACCATAAAGGTTGAAAGGCCTGCTGCTACATCGAGTAGAAATGGTAGCAGAGATCCTGGAAAGAGACCTTTGGCTAATAAATTTGGGGATAAACAATCAG
ACGTGCAGAAAGATTTGTGGTGGTCGAATCTTCCTTATGTTCTAGCTATCCTTATGCGTAGAGGTTCAGAACATGAGGAATCTGGTGGACTTTATGCTTT
AAGAGTGGCTTCCCAGGCAGATCAGCACGGGGACTTTTCTTACACCATTGCTTTTGAGGACCGTGGCGATGCCAATAATTTCTGTTATTTACTTGAGTCC
TTTTTTGAAGATTTAGGTGACTTCAGTGCTGATATTGTTCCTCTGCAAATAAAAGAACTTCATGATGCAGTGAAATCGCATTCCAAGAAGGTAATTGTTG
TGAAGAGGGGGCAGCTTAAGCTCTATGCTGGTCAACCATTTTCGGAGGTGGAGACGGCTTTGTACTCTTTGCTTGAACAAGATTAA
AA sequence
>Potri.008G222000.1 pacid=42806536 polypeptide=Potri.008G222000.1.p locus=Potri.008G222000 ID=Potri.008G222000.1.v4.1 annot-version=v4.1
MPLLHRPAMAGTPCATFTFLSISTISIPDANPHRFRLKPLLCSTTSTSFPSKRIKRKNHLRPKILKTLTKPFPTAPLPQIETTPIQNDTFYDTPLKETLS
SEELEADTVDEFNVSETVSSAVEHSGSVGKLSVKSVLKYSGYFLGVLLFQTICAVWLFGNTDSDGKERNFNEKGNVLLDVNGNEVYVNESELEEKISEIK
VMAREARKRERRELIEGDKGSELEKEIGARLVKLEKRLNSKREKLPDSFMEYLGLFGDFEDGYGEDASDSKEENKTLTFKKKLRFKSPSMDARSAPKGFS
GLKDDSGSNISDLNGVSRKTDVRYLKKDTGGKHGNVQLNSVKNEGNKFEKKRANLRKEMGSGTVQKIREGRSSNEVPDAGKSRDLETLNSESSTKENQET
TIKVERPAATSSRNGSRDPGKRPLANKFGDKQSDVQKDLWWSNLPYVLAILMRRGSEHEESGGLYALRVASQADQHGDFSYTIAFEDRGDANNFCYLLES
FFEDLGDFSADIVPLQIKELHDAVKSHSKKVIVVKRGQLKLYAGQPFSEVETALYSLLEQD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15820 unknown protein Potri.008G222000
[exp]
0 1
AT5G40400 Pentatricopeptide repeat (PPR)... Potri.017G071600
[exp]
1.41 0.9276
AT5G66820 unknown protein Potri.007G041300
[exp]
3.16 0.8813
AT3G22430 unknown protein Potri.008G152900
[exp]
6.00 0.9006
AT5G18390 Pentatricopeptide repeat (PPR)... Potri.019G025700
[exp]
6.24 0.9052
AT4G28010 Tetratricopeptide repeat (TPR)... Potri.009G069600
[exp]
7.61 0.8620
AT2G43250 unknown protein Potri.007G124700
[exp]
8.00 0.8880
AT3G63390 unknown protein Potri.002G047400
[exp]
9.94 0.8866
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.008G012250
[exp]
10.90 0.8894
AT2G38770 EMB2765 EMBRYO DEFECTIVE 2765, P-loop ... Potri.003G201200
[exp]
10.95 0.9001
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Potri.014G166300
[exp]
12.36 0.8729

Potri.008G222000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.