Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49020 762 / 0 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G06930 737 / 0 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT4G29510 189 / 8e-55 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT1G04870 184 / 7e-53 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT2G19670 183 / 1e-52 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 182 / 1e-51 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT3G12270 142 / 3e-36 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT4G16570 57 / 2e-08 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) AT4G31120 46 / 6e-05 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014600 [exp] 980 / 0 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.006G149400 [exp] 188 / 3e-54 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 183 / 1e-52 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G071200 [exp] 181 / 8e-52 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.007G000300 [exp] 174 / 5e-49 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 133 / 8e-33 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.003G076500 [exp] 61 / 2e-09 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Potri.014G004000 [exp] 52 / 2e-07 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.018G000500 [exp] 43 / 0.0007 AT4G31120 1063 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043412 [exp] 835 / 0 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 820 / 0 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10000982 [exp] 188 / 6e-54 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 187 / 8e-54 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 181 / 5e-52 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 181 / 5e-51 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10043295 [exp] 169 / 2e-47 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 170 / 3e-47 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10008577 [exp] 155 / 3e-41 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008664 [exp] 123 / 2e-29 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05185 [poplar] [flax] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G222700.4 pacid=42807969 polypeptide=Potri.008G222700.4.p locus=Potri.008G222700 ID=Potri.008G222700.4.v4.1 annot-version=v4.1 ATGGAGATTCAAAAACAAAGCAAACAGCAACAAGAGTTTGCTTTAGCATCAATGACTGAGCTCGCTTCTTCTTCTTCTTCGTCGTCGTTTTGTTCAGATT CTCAATCTGTACCGGTAACTGCTAGGTTTAGCGCTGACAATGGAGTTGTGGAGCTTCGATTTAACCGAGAGTCTGAATCAGCTGATTCTATCAGTGTTGA TGTCAAAACTGCTCGGTTATTCAAGCTGGGGGGTTTACAATCAGTTTGCATAACCAAAGCGTCAGGTGCTGACACGGGCAAAGAGAAATATTCAACAGGA GTCACTGTCCAATTTAGAAATGAGGAGGAGAGCAGGGCCTTCCATTGTGCATTTGAACAATGGAAGAAGGAAGTCACTGTTCAAGGAACATTGCTAACTG ATGGAGCAGTCACAGCTTGTAAAAGCAAGTTTGATGATAAAATAGAACCATCATCTGCCAAGCTGTATTTCCATTACTATGGGCAATTGCTACATCAGCA AAACATGCTACAAGATTATGTGAGGACAGGAACCTATTATGCTGCAGTCATTGAGAATCGTGCAGATTTTTTTGGTCGTGTGGTGGTTGATGTTGGTGCT GGTAGTGGTATTTTGTCATTTTTTGCTGCTCAGGCTGGTGCAAAGCATGTCTATGCCGTGGAAGCATCTGAAATGGCAGATTATGCCCGGAAACTGATTG CTGGAAACCCATCGCTTGGGGAAAAGATAACAGTAATAAAGGGTAAAGTTGAGGAAGTTGAATTGCCAGAGAAAGCAGATATTCTGATCTCTGAACCAAT GGGTACCTTGTTAGTCAATGAAAGAATGTTGGAGTCCTATGTGATTGCAAGAGATAGGTTTCTTGTTCCAAATGGAAAAATGTTTCCTACAGTTGGAAGG ATACACATGGCACCTTTTAGTGATGAATATTTATTTGTTGAAATTGCGAATAAGGCCCTCTTTTGGCAGCAACAAGGCTATTACGGAGTTGATCTGACAC CCTTGCATGCATCTGCATTTGGGGGATACTTTTCTCAGCCTGTTGTGGATGCCTTTGATCCTAGATTATTGGTGGCTCCTGCAATTAGTCATGTTTTAGA CTTTACTGAAATAAAGGAAGAGGACTTATATGAAATTGATATACCTTTAAAATTCATAGCCTCTGTAGGAACCAGAGTTCATGGGCTGGCTTGCTGGTTC GATGTGTTATTTAATGGGAGTACTGTACAAAGGTGGCTTACAACTGCCCCTGGTGCGCCTACCACCCACTGGTACCAATTACGTTGTGTTCTGTCTCAGC CACTCTATGTGGTGGCAGGACAAGAAATTACTGGCCAGCTCCGGATGGTTGCCCACAATGCTCAGAGTTACACTGTATATTTAACTTTGTCAGCTAAAAT GTGGGGACCCGGTGCTGAGCAAGGAGGAATACTCCAGACATCATCTTGCAAACTCGACCTAAAAGAGCCATATTACAGAATGTCCCAACCACAAACTTAT GCAATGGCACAAGATCAGCAACCACACCAGCCAATACACGCACAGGATATACACATTCAGGCAGATGATTTAAAGGAGCCTGAGTTGATACAACCGCCGC CTCAGAATTTGGATGCCCAGGTCCAATAA
AA sequence Show only first row Show all	>Potri.008G222700.4 pacid=42807969 polypeptide=Potri.008G222700.4.p locus=Potri.008G222700 ID=Potri.008G222700.4.v4.1 annot-version=v4.1 MEIQKQSKQQQEFALASMTELASSSSSSSFCSDSQSVPVTARFSADNGVVELRFNRESESADSISVDVKTARLFKLGGLQSVCITKASGADTGKEKYSTG VTVQFRNEEESRAFHCAFEQWKKEVTVQGTLLTDGAVTACKSKFDDKIEPSSAKLYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVGA GSGILSFFAAQAGAKHVYAVEASEMADYARKLIAGNPSLGEKITVIKGKVEEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPNGKMFPTVGR IHMAPFSDEYLFVEIANKALFWQQQGYYGVDLTPLHASAFGGYFSQPVVDAFDPRLLVAPAISHVLDFTEIKEEDLYEIDIPLKFIASVGTRVHGLACWF DVLFNGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVVAGQEITGQLRMVAHNAQSYTVYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQTY AMAQDQQPHQPIHAQDIHIQADDLKEPELIQPPPQNLDAQVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.008G222700 [exp]	0	1
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	7.07	0.8069
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	10.77	0.7881
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	15.00	0.7830
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	18.00	0.7919
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G077300 [exp]	19.97	0.7172
AT2G04540			Beta-ketoacyl synthase (.1)		Potri.002G219500 [exp]	26.26	0.7499
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	28.24	0.7910
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G116700 [exp]	28.46	0.6850
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	30.39	0.7511
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G149800 [exp]	30.59	0.7717

Compare expression of checked genes

Potri.008G222700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.