Plant FIBer expression Database

Potri.008G224075 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02570 218 / 4e-68 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
AT1G59790 171 / 3e-53 Cullin family protein (.1)
AT1G43140 175 / 3e-52 Cullin family protein (.1)
AT1G02980 166 / 4e-49 ATCUL2, CUL2 cullin 2 (.1)
AT1G59800 150 / 4e-46 Cullin family protein (.1)
AT1G26830 63 / 1e-12 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1)
AT1G69670 63 / 1e-12 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G217300
[exp]
255 / 3e-82 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.010G023800
[exp]
248 / 2e-79 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.001G117200
[exp]
222 / 1e-69 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.003G115500
[exp]
209 / 4e-65 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.008G217700
[exp]
142 / 1e-42 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.013G020000
[exp]
98 / 2e-25 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.005G027800
[exp]
88 / 5e-22 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.005G027900
[exp]
86 / 3e-21 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Potri.008G148300
[exp]
69 / 1e-14 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024562
[exp]
223 / 7e-70 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10028917
[exp]
219 / 2e-68 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10032200
[exp]
214 / 1e-66 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10004334
[exp]
209 / 1e-64 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Lus10036739
[exp]
71 / 4e-15 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1)
Lus10037188
[exp]
70 / 6e-15 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1)
Lus10009610
[exp]
68 / 9e-15 AT1G69670 284 / 1e-91 ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
Lus10012835
[exp]
64 / 1e-12 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00888 Cullin Cullin family
Representative CDS sequence
>Potri.008G224075.1 pacid=42807401 polypeptide=Potri.008G224075.1.p locus=Potri.008G224075 ID=Potri.008G224075.1.v4.1 annot-version=v4.1
ATGTTAAGAGAGCTAGTTAAAAGGTGGGCAAACCATAAAGTCATGGTTAGGTGGCTTTCTCGTTTCTTCCATTACCTTGACCGCTATTTCATTGCCCGGA
GGTCACTTCCACCATTTAATGAAGTTGGACTTACTTGCTTCCGTGATCTGGTGTACCAGGAACTGAATGGGAAAGTGAGGGATGCTGTAATTTCTCTGAT
TGATCAAGAGCGTGAAGGAGAGCAGATTGACCGAGCTTTATTGAAGAATGTTTTAGATATATTTGTTGAAATTGGAATGGGACAGATGGATTACTATGAA
AATGACTTTGAAGCAGCGATGCTTAAAGATATAGCTGCTTATTATTCTCGGAAGGCATCAAACTGGAAGGCATCAAAAGCTTTCTGA
AA sequence
>Potri.008G224075.1 pacid=42807401 polypeptide=Potri.008G224075.1.p locus=Potri.008G224075 ID=Potri.008G224075.1.v4.1 annot-version=v4.1
MLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPPFNEVGLTCFRDLVYQELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYE
NDFEAAMLKDIAAYYSRKASNWKASKAF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G224075
[exp]
0 1
AT2G05170 ATVPS11 vacuolar protein sorting 11 (.... Potri.014G165400
[exp]
1.73 0.8588 Pt-ATVPS11.1
AT2G35800 SAMTL S-adenosyl methionine transpor... Potri.010G217900
[exp]
4.89 0.8105
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.006G004166
[exp]
5.09 0.8654
AT1G30760 FAD-binding Berberine family p... Potri.001G463550
[exp]
7.34 0.8200
AT2G32910 DCD (Development and Cell Deat... Potri.005G042700
[exp]
8.00 0.8559
AT5G38560 AtPERK8 proline-rich extensin-like rec... Potri.017G110400
[exp]
9.16 0.8254
AT1G60890 Phosphatidylinositol-4-phospha... Potri.003G019100
[exp]
11.18 0.8097
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
11.53 0.8412
Potri.003G070000
[exp]
13.56 0.8409
AT1G75550 glycine-rich protein (.1) Potri.005G234601
[exp]
17.88 0.7716

Potri.008G224075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.