Plant FIBer expression Database

Potri.008G224801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G224328
[exp]
268 / 1e-83 ND /
Potri.008G224129
[exp]
233 / 6e-67 ND /
Potri.008G224183
[exp]
140 / 2e-37 ND /
Potri.014G186092
[exp]
105 / 4e-25 ND /
Potri.008G225501
[exp]
94 / 3e-20 ND /
Potri.014G186308
[exp]
81 / 3e-17 ND /
Potri.014G185516
[exp]
50 / 3e-06 ND /
Potri.008G225101
[exp]
49 / 4e-06 ND /
Potri.008G224501
[exp]
49 / 4e-06 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002717
[exp]
61 / 2e-10 AT1G11340 81 / 8e-18 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.008G224801.1 pacid=42808020 polypeptide=Potri.008G224801.1.p locus=Potri.008G224801 ID=Potri.008G224801.1.v4.1 annot-version=v4.1
ATGGCAGGGGTAGACACTACTAGGTCCCAGCTGAATGGGGGAACCCCGGCAGCTCGCCTGCCGCGGCCAGCGACGTCGGGCTGGCCCCTGCAGCGCCTAG
CCTCTCCCACGCAGGGCGCAGGCCAGAACGCGGGGGGCCAGGGCCCGAAGGCAGCCCCCCCGCGGGCGAGAGAGCAAGCCAGCAGGGGCTGTCGCCTGCC
GCGGCCAGCGACGTCGGGCTGGCCCCTGCAGCGCCTAGCCTCTCCCCCGCAGTGGGCAGGCCAGAACGCAGGGGGCCAGGGCCCGAAGGCAGCGCGGGAT
GGAGAGCAAGCCAGCAGGGGCAGCCCCTGTTTTCGTCAGCCTAGCATGGCTGCGGGGGCTGCGGGACGTCACGCGCGCGCGCCCAAGCGCCCAAGTGCCC
AAGGGCCCCCAAGGGCCCCAGGCCCTCAGGCCCCAGCGCCCAGCGCGGGCGCGCGCGCGCGCGTGGTATTTTTGGGCAAAAGGTCGTCGCCGGCCGGAAA
ACGGGTCGTCGCCGGCCGGAAAACGGGTCGTCGCCGGCCGGAAAACGGGTCGTCGCCGGCCGGAAAACGGGTCGTCGATGCCGGCGAAACTTCGGGCCAT
GAGGCCCCCCACTTTACCCGTCCAGACTCATCGCCAGCACCTGCTGCCGATTCTGCCGATTTCGCCGGCGCTGCCGATTCCACCACTGCCCCCACCGTGT
CTAAACCAGCGCTGTTTCGTCAGCGTGTCCCCTGCACGAATTTCCCTGTCTGGCCTGGACAGTCCATCGTCCAGCCCATGTTCGTCGAGAAATCTGCGCT
GCCGATTTTTCCCCATGTTGGCATGGCTGCCGCTGCCCCCTTGTCTGGACCAACAGTCTTTTCCGTCAAGCCCTGGACTGTAAATCGTCCCCACTCAGAC
GGTCTTTCTCGGCGAGCCTTGGACCGTCCAGACTCATCGCCAGCACCTGCTGCCGATTCTGCCGATTTCGTCGGCGCTGCCGATTCCACCACTGCCCCCG
CCGTGTCTAAACCAGCGCTGTTTCGTCAGCGTGTCCCCTGCACGAATTTCCCTGTCTGGCCTGGACAGTCCATCGTCCAGCCCATGTTCGTCGAGAAATC
TGCGCTGCCGATTTTTCCCCATGTTGGCATGGCTGCCGCTGCCCCCTTGTCTGGACCAACAGTCTTTTCCGTCAAGCCCTGGACTGTAAATCGTCCACAC
TCAGAGTCAGCACCCGCTGCCGATTCTGCCGCCTTTGCCGATTTCGCTGGCTCTGCCGATTCTGCGCTGCCGATCCCCCAGCTGCACAAGTCTGCGCCGC
CGATTTTTCCCGCCGGTGGCATGGCTGCCACCGCCCCAATGTCCAGACCAGCAGTCTTGTCCGTCAAGCCTTGGACTGTCCAGCCAGTCCCGAGATCCCG
GGAACGCTGCCGGATCGCTTCCCAGCCTCCGCGACGCCGTGCCCCTGGAGGGGCTCGGGGGGGGACGAATCGGAGCGACATGGGGCTGAATCTCAGTGGA
TCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAA
AA sequence
>Potri.008G224801.1 pacid=42808020 polypeptide=Potri.008G224801.1.p locus=Potri.008G224801 ID=Potri.008G224801.1.v4.1 annot-version=v4.1
MAGVDTTRSQLNGGTPAARLPRPATSGWPLQRLASPTQGAGQNAGGQGPKAAPPRAREQASRGCRLPRPATSGWPLQRLASPPQWAGQNAGGQGPKAARD
GEQASRGSPCFRQPSMAAGAAGRHARAPKRPSAQGPPRAPGPQAPAPSAGARARVVFLGKRSSPAGKRVVAGRKTGRRRPENGSSPAGKRVVDAGETSGH
EAPHFTRPDSSPAPAADSADFAGAADSTTAPTVSKPALFRQRVPCTNFPVWPGQSIVQPMFVEKSALPIFPHVGMAAAAPLSGPTVFSVKPWTVNRPHSD
GLSRRALDRPDSSPAPAADSADFVGAADSTTAPAVSKPALFRQRVPCTNFPVWPGQSIVQPMFVEKSALPIFPHVGMAAAAPLSGPTVFSVKPWTVNRPH
SESAPAADSAAFADFAGSADSALPIPQLHKSAPPIFPAGGMAATAPMSRPAVLSVKPWTVQPVPRSRERCRIASQPPRRRAPGGARGGTNRSDMGLNLSG
SWQQGHSATYNTPSRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G224801
[exp]
0 1
ATCG01250 ATCG01250.1, ND... NADH-Ubiquinone/plastoquinone ... Potri.011G075051
[exp]
11.83 0.8836
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.013G143400
[exp]
16.12 0.8757
ATCG01250 ATCG01250.1, ND... NADH-Ubiquinone/plastoquinone ... Potri.013G139112
[exp]
28.93 0.8655
Potri.007G046150
[exp]
29.93 0.6598
Potri.007G062061
[exp]
32.68 0.8584
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Potri.013G162600
[exp]
38.01 0.8490
ATCG00480 ATCG00480.1, AT... ATP synthase subunit beta (.1) Potri.007G062122
[exp]
38.49 0.8560
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Potri.019G028000
[exp]
40.12 0.8536
ATMG00730 ATMG00730.1, CO... cytochrome c oxidase subunit 3... Potri.007G062402
[exp]
41.47 0.8441
ATMG00580 ATMG00580.1, NA... NADH dehydrogenase subunit 4 (... Potri.007G061921
[exp]
46.15 0.8512

Potri.008G224801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.