Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 786 / 0 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT2G16640 549 / 2e-175 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 534 / 6e-171 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT5G20300 391 / 2e-120 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT4G15810 101 / 2e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05000 91 / 3e-19 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 84 / 4e-17 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G02482 75 / 1e-15 chloroplast outer envelope GTP-binding protein, putative (.1) AT4G09940 52 / 2e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 49 / 1e-05 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014300 [exp] 1311 / 0 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 987 / 0 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131200 [exp] 542 / 3e-170 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 538 / 3e-169 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 521 / 3e-165 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 394 / 1e-121 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 353 / 1e-106 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 98 / 7e-22 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 97 / 1e-21 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006048 [exp] 761 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 538 / 8e-170 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028707 [exp] 377 / 1e-121 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 355 / 2e-107 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10043414 [exp] 336 / 7e-102 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027712 [exp] 334 / 1e-99 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10034170 [exp] 325 / 3e-95 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10028706 [exp] 303 / 4e-87 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10027835 [exp] 263 / 7e-72 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10004619 [exp] 124 / 5e-31 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04548 [poplar] [flax] AIG1 AIG1 family CL0023 [poplar] [flax] PF11886 [poplar] [flax] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Potri.008G225000.1 pacid=42806033 polypeptide=Potri.008G225000.1.p locus=Potri.008G225000 ID=Potri.008G225000.1.v4.1 annot-version=v4.1 ATGGCCTCAAAGACCCATGTCCCTGTTTCAGCAACACAAGGGACCACCCCTTCACTACTATCATCTACAGGTTTTTTCCCTATCCGAGCTCCTGTTACGG TTGATGGTTTTCAATCTGATGGTTATAAAACTGACAGCTCTGAAAGCAACATTAGTGGTAGTAGTTGTGTTGATAGTGAGTTTGCGAGTGGTGAAGAAGA TTTTGACACTGCATCCGAGAGGCCTTTTTTAGGTGACCCAGATGAGGAAAACAGCGAAGAGGGTGGTTTCGGTGGAAGGTATCGAGTTTCTTGGCCGTTT GCGGGTGACCCAGATGAAGAAAGTTTAGTTCTTGCGGAGGAGGAGGAGAGTAGTGTGACTGATGAATTTGGCACTGTTGTTGAATTGGACAATGCGAATT CGAATGGAGTTAGGCCTATTGCTCAGTTGTCACTGGACGATGATGAATTATATGAGGTGGCTGGCGATGAGGGAATGATGAATGGAGTGGAAGATGGAAG GCTTTCAGATGTCGTCAAAGTTCCTAGTTTTGGGGTTCAAGAGAGAGAAGATACTGTGCTTCGAGTTAAAGCTCTGGGAACTGAAGAAGAAAAGGAAGGT GAGTTATTGGTTCAGAGTAATTCTTCTTCTGTTGACAACCAATCTGGGTTGTTAATGGAGAGGGATGATGGACCTGATAATGTTGTTTTGGGTCCTAAAG ATGCAGCTGTGATGAATGGTTCTGTTAATGACTCTGGTTCAGTTAATTTGGTCGAGGACAATAGTCATGTTGTTACAGTTATTCAGCCCATCAACTTGTT GGTGAATGATGAATCTCCTGAAACCTCTGAAGGTGATAGAATGGAAGATCTGCGAGAAAGCTATACAACTTCCCATGATATCAAAGATGAAGCAAACCTT GATTCAGAAACAATAGGAGGACAAGAAGGCTTGCTTTCTGACGATCATATTGAAGAGTTAATTTTTGGTGGCTCTGGTACAACCAAGCACATCATGAATG GATTACCACAAAATTTAGCCTTCTCTTCTCCTCCAGGGATCGAAGCGTATCATGATCATCCACAGACGATAGATGCACAAATTACTATGGACTCGGATGA AGATACAGACTCAGATGAAGAAGCGGACGTTGTTAAAGAGCCAGTAGGAAAGCAATTATTTGATTATGATGCATTGGCAGCTCTTTTGAAAGCAGCAACT GGTGCTGAATTGGATGGAGGCAGGATAGCAATAAGCTCGGTTGATGGTTCTGGATTATTTTCTCTTGAACGGCCTGCTGGTTCAGGTTTCCCATTTCACT CTAGGAGACCTGCTCCCCCACCAGATGTGCTAAAGTGCACTTTAAGTGAAGAAGAAGAGAAGATTTTAGAGAAGATACATAACATAAGGGTGAAGTTCTT GAGGCTTGTCCAGCGACTAGGACAGTCTCCTGAAGATTCTATAGTTGAATCAGTGCTCCATCGGCTGGACCCAGGTGAAGGGAAACGTTTTAGTCGAGTG TTTAGCCTTGAAAATGCCAAGAGTATGGCCACGCAGCTTGAAGCAGAGGGCAAAGATGATTTAGACTTCTCTTTAAACATTTTGGTTCTCGGGAAAACTG GAGTGGGAAAGAGTGCTACCATTAATTCTATTTTTGGTGAGAAGAGAGTTGAGATCAATGCATTTGCGCCTGCCACAACTAGGGTGAATGAGATAGTTGG AACAATCAATGGAGTAAAAATTAGAATCATTGACACACCAGGTCTCATGTCCTCTGTAAAGGAAGAAGCTACCAACCGGAAAATATTAGCTTCTATAAAA AAGTCTATAAACAAGTTTCCTCCTGATGCTGTACTCTATGTTGACAGGCTAGACACCCATGATAGAGATCGCAATGATTTGCTGCTGTTAAGATCGCTTT CCAGAACTCTAACTTCATCAATATGGAATGGTGCAATTGTAACTCTGACACACGCAGCTTCTCCTCCTCCTGATGGACCATCTGGGTCATCCCTAGGTTT TGACGTATATGTTGCTCAACGATCTCGTGTTATTCAGCAAGCAATCATCCAATCAGTTGGTGATCCGCATCTGATGCATCCAAGTATGAAGCGTCCAGTG TCTCTCGTTGAGAACCATTCTTTGTGCCAGAAGAACGAAAACAGAGAAAATGTTCTCCCGAATGGACAAAGTTGGAGACCCCAATTGTTACTGTTGTGTT ACTCGCTGAAGGTTTTGTCAGAAGCAAGTTCTGTATCCAAGCCTGAAGATGTTATTGACGACAAGAAACCTTTTGGTTTACGGCTTCGCGCTTTACCTCT ACCCCACATGGTGTCTTCTCTATTGCAGTCTCGCCCTCATCTAAAACTCCCTACTGACCTGAGTGGAGAAGACATTGATTCAGATATGGACTTGGTTGAT CTCTCTGATTCTGATGGAGAAGATGAGGATGAATATGACCAGCTTCCACCGTTCAAGCCTTTGAGGAAATCTCAGGTTCAGAAGCTCAGCAAAGAGCAAA GGAAAGCTTATTTTGAGGAGTATGATTATCGGGTGAAACTCCTTCAAAAGAAGGAGTGGAGGGATGAGTTGAAAAGGTTGAAGGAGATAAAGAAGAGAGG CAAGAATAGCAGAAATGATTATCATGACATTGGGGAAGATGTGGACCAGGAAGATGAAGGTCCAACACCAGTGCCGGTTCCTTTGCCTGACTTTGTCCTC CCACACTCATTTGACAGCGACAATCCTTCATACAGGTACAGAGTTTTGGAGCCTGCATCTCAGTTTCTTGTTAGGCCAGTTTTGGATGCCCGGGGGTGGG ACCATGATTGCGGATATGATGGTGTTAGCATTGAAAGTAATCTTGCTGTTGCTGGTCGGTTTCCTGGTGCATTTACGGTTCAAATCACAAAAGATAAGAA AGACTTCAATATCCAATTAGATTCTTCAATTTGTGCAAAGCATGGAGAAAGCGGATCAACTATGGCAGGATTCGACATCCAGACTATTGGAAGGCAGCTT GCTTATATCTTGAGAAGTGAGACCAAACTCAAAAAGTTTAAATTGAACAAAACATCAGCTGGGATATCAATTACTCTACTAGGTGAAAATGTAGTCACTG GACTCAAGATTGAGGATCAGATTGCAGTTGGAAAGCGCTTGGCTTTGGTAGGAAATGCTGGCACTGTGAGATCCGGTGGTGATACTGCCTATGGAGCAAA CCTTGAAGTGCACCTCAAGAGTAAAGATTTTCCTATAGAACAGGACCAATCCACATTAGGTCTGTCCTTGATGAAGTGGAGGGGTGATTTGGGTCTGATG GCCCATTTACAGTGTCAATTCTCTGTTGGAAGGAATTCTAAAATGGCTATCCGTGTTGGGATGAACAATAAGCTAAGCGGCCAGATCTCCATCAAGACAA AAAGCTCGGAACTGCAAGCTGCACTTATTGTTATTGTGCCAGTTGCAGTGTCCATCCTTCGGAGTATTTATCCTGGTTCTAACGCAGGAAGCTCAAATAA GCTAGATTATTAA
AA sequence Show only first row Show all	>Potri.008G225000.1 pacid=42806033 polypeptide=Potri.008G225000.1.p locus=Potri.008G225000 ID=Potri.008G225000.1.v4.1 annot-version=v4.1 MASKTHVPVSATQGTTPSLLSSTGFFPIRAPVTVDGFQSDGYKTDSSESNISGSSCVDSEFASGEEDFDTASERPFLGDPDEENSEEGGFGGRYRVSWPF AGDPDEESLVLAEEEESSVTDEFGTVVELDNANSNGVRPIAQLSLDDDELYEVAGDEGMMNGVEDGRLSDVVKVPSFGVQEREDTVLRVKALGTEEEKEG ELLVQSNSSSVDNQSGLLMERDDGPDNVVLGPKDAAVMNGSVNDSGSVNLVEDNSHVVTVIQPINLLVNDESPETSEGDRMEDLRESYTTSHDIKDEANL DSETIGGQEGLLSDDHIEELIFGGSGTTKHIMNGLPQNLAFSSPPGIEAYHDHPQTIDAQITMDSDEDTDSDEEADVVKEPVGKQLFDYDALAALLKAAT GAELDGGRIAISSVDGSGLFSLERPAGSGFPFHSRRPAPPPDVLKCTLSEEEEKILEKIHNIRVKFLRLVQRLGQSPEDSIVESVLHRLDPGEGKRFSRV FSLENAKSMATQLEAEGKDDLDFSLNILVLGKTGVGKSATINSIFGEKRVEINAFAPATTRVNEIVGTINGVKIRIIDTPGLMSSVKEEATNRKILASIK KSINKFPPDAVLYVDRLDTHDRDRNDLLLLRSLSRTLTSSIWNGAIVTLTHAASPPPDGPSGSSLGFDVYVAQRSRVIQQAIIQSVGDPHLMHPSMKRPV SLVENHSLCQKNENRENVLPNGQSWRPQLLLLCYSLKVLSEASSVSKPEDVIDDKKPFGLRLRALPLPHMVSSLLQSRPHLKLPTDLSGEDIDSDMDLVD LSDSDGEDEDEYDQLPPFKPLRKSQVQKLSKEQRKAYFEEYDYRVKLLQKKEWRDELKRLKEIKKRGKNSRNDYHDIGEDVDQEDEGPTPVPVPLPDFVL PHSFDSDNPSYRYRVLEPASQFLVRPVLDARGWDHDCGYDGVSIESNLAVAGRFPGAFTVQITKDKKDFNIQLDSSICAKHGESGSTMAGFDIQTIGRQL AYILRSETKLKKFKLNKTSAGISITLLGENVVTGLKIEDQIAVGKRLALVGNAGTVRSGGDTAYGANLEVHLKSKDFPIEQDQSTLGLSLMKWRGDLGLM AHLQCQFSVGRNSKMAIRVGMNNKLSGQISIKTKSSELQAALIVIVPVAVSILRSIYPGSNAGSSNKLDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	0	1
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	1.00	0.8836	SHL1.1
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.013G152100 [exp]	1.73	0.8794
AT1G13360			unknown protein		Potri.015G054300 [exp]	2.00	0.8707
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	2.82	0.8821
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195900 [exp]	4.89	0.8273
AT3G15110			unknown protein		Potri.001G372850 [exp]	5.29	0.8493
AT3G52220			unknown protein		Potri.008G019100 [exp]	6.32	0.8614
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	8.94	0.8376
AT5G13470			unknown protein		Potri.003G203900 [exp]	9.48	0.8493
AT5G11310			Pentatricopeptide repeat (PPR)...		Potri.006G247400 [exp]	12.24	0.8172

Compare expression of checked genes

Potri.008G225000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.