Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05670 206 / 3e-67 signal recognition particle binding (.1.2) AT2G18770 173 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17060 39 / 0.0005 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 39 / 0.0006 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020900 [exp] 244 / 2e-82 AT5G05670 388 / 6e-138 signal recognition particle binding (.1.2) Potri.013G088800 [exp] 40 / 0.0004 AT5G17060 370 / 9e-133 ADP-ribosylation factor B1B (.1) Potri.019G052200 [exp] 40 / 0.0005 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013031 [exp] 218 / 6e-72 AT5G05670 357 / 2e-125 signal recognition particle binding (.1.2) Lus10030896 [exp] 218 / 2e-71 AT5G05670 350 / 1e-122 signal recognition particle binding (.1.2) Lus10029130 [exp] 217 / 4e-71 AT5G05670 368 / 2e-129 signal recognition particle binding (.1.2) Lus10030593 [exp] 209 / 3e-67 AT5G05670 352 / 7e-122 signal recognition particle binding (.1.2) Lus10013024 [exp] 122 / 1e-33 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009571 [exp] 39 / 0.0007 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF09439 [poplar] [flax] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Potri.009G001600.2 pacid=42771525 polypeptide=Potri.009G001600.2.p locus=Potri.009G001600 ID=Potri.009G001600.2.v4.1 annot-version=v4.1 ATGGAAGGAATGCAGCATTGGAAAATTGAAATGCAAGAATGGTTGCAACGAGGGATTGAATATGCACATCAGATACCTTTGCTGCTGCTGCCATGCACAC AATTTAATTGTGAGTGTTGGGTATATAGAGGCTGCAAAGCACAATGTACAATAAATTATTGGTATAATATCATTGTGCTCGCGGGGCTTAGCGCAAGTGG AAAAACTCTTCGAGATCTTTCTGTACATCGGGGCACTGTTACCTCAATGGAACCAAACGAGGACACTTTCCTGCTACATTCTGAAACTACTAAGATAGGG AAAATGAAGTCTGTACATGTTGTTGATATTCCTGGCCATTCTCGTCTTCGACCCAAACTAGATGAGTTCTTGCCTCAAGCAGCTGGCATGGTGTTTGTTG TTGATGCTTTGGAATTCTTACCCAACTTGATTATCTCTATTCTCTATGATATTTTGACTAAGGCAAGTGTTGTCACAAAGAAAGTTCCAGTTCTCATCTG CTGTAACAAGACAGACAAAGTGACAGCACATACAAAGGAATTCATCCGATAG
AA sequence Show only first row Show all	>Potri.009G001600.2 pacid=42771525 polypeptide=Potri.009G001600.2.p locus=Potri.009G001600 ID=Potri.009G001600.2.v4.1 annot-version=v4.1 MEGMQHWKIEMQEWLQRGIEYAHQIPLLLLPCTQFNCECWVYRGCKAQCTINYWYNIIVLAGLSASGKTLRDLSVHRGTVTSMEPNEDTFLLHSETTKIG KMKSVHVVDIPGHSRLRPKLDEFLPQAAGMVFVVDALEFLPNLIISILYDILTKASVVTKKVPVLICCNKTDKVTAHTKEFIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05670			signal recognition particle bi...		Potri.009G001600 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.005G183800 [exp]	1.41	0.8741
AT1G53163			unknown protein		Potri.001G398000 [exp]	13.41	0.8046
AT5G17370			Transducin/WD40 repeat-like su...		Potri.003G155900 [exp]	13.85	0.8194
					Potri.003G025032 [exp]	15.71	0.7468
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G036100 [exp]	18.57	0.7354
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Potri.010G206001 [exp]	19.62	0.7699
AT1G77230			Tetratricopeptide repeat (TPR)...		Potri.005G184001 [exp]	22.09	0.7727
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063000 [exp]	24.08	0.7446
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	25.98	0.7587
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	27.49	0.7791

Compare expression of checked genes

Potri.009G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.