Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22850 710 / 0 Eukaryotic aspartyl protease family protein (.1) AT2G36670 546 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 541 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G05840 318 / 3e-103 Eukaryotic aspartyl protease family protein (.1) AT3G02740 314 / 8e-102 Eukaryotic aspartyl protease family protein (.1) AT5G36260 313 / 2e-101 Eukaryotic aspartyl protease family protein (.1) AT1G65240 287 / 1e-91 Eukaryotic aspartyl protease family protein (.1) AT3G42550 273 / 2e-86 Eukaryotic aspartyl protease family protein (.1) AT5G43100 189 / 5e-53 Eukaryotic aspartyl protease family protein (.1) AT3G50050 176 / 2e-48 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213600 [exp] 888 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 603 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 572 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 332 / 1e-108 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 312 / 4e-101 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 189 / 5e-53 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 187 / 4e-52 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 146 / 2e-38 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 144 / 2e-37 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021397 [exp] 711 / 0 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 697 / 0 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 552 / 0 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 550 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 542 / 0 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10036430 [exp] 335 / 5e-110 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 324 / 8e-106 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 323 / 2e-105 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 323 / 2e-105 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 304 / 1e-97 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G001700.1 pacid=42770784 polypeptide=Potri.009G001700.1.p locus=Potri.009G001700 ID=Potri.009G001700.1.v4.1 annot-version=v4.1 ATGGGAGCTGCGCCTTTTCCCGCGGGAATCCTAATCGCTGCTGTAGTGTTTCATGCTACGGTGGTTCTGTCTTCTTTTCCGGCCACTTTTCATCTGGAAA GAGGGATTACGGCGAACTATAAACTGAAACTGAGTAAACTTAAAGAGCGAGACAGAGTGAGGCATGGCAGAATGTTGCAGTCTTCAGGAGTTGGTGTTGT TGATTTCCCTGTTCAAGGCACCTTTGATCCTTTCCTCGTTGGGCTTTATTATACAAGACTACAATTGGGTACTCCTCCAAGAGATTTCTATGTACAAATA GATACTGGAAGTGATGTTTTGTGGGTTAGTTGTGGCTCCTGCAATGGTTGTCCTGTTAACAGTGGACTTCATATTCCTCTCAATTTCTTTGATCCTGGAA GCTCACCAACAGCTTCGTTGATATCTTGTTCAGACCAAAGATGTAGTCTTGGACTTCAATCCTCAGATTCTGTCTGTTCTGCTCAAAATAATCTGTGTGG TTACAACTTCCAGTATGGTGATGGCAGTGGCACATCAGGATATTATGTATCGGATTTGTTGCACTTTGACACCGTTCTTGGTGGGTCTGTGATGAATAAT TCTTCAGCTCCTATTGTATTCGGATGTAGCGCATTACAGACTGGGGACTTGACAAAGTCAGATAGAGCAGTTGATGGGATATTTGGGTTTGGACAACAAG ACATGTCTGTTGTCTCTCAACTAGCTTCACAAGGAATATCACCAAGAGCGTTTTCTCACTGCCTGAAAGGAGATGATTCTGGTGGTGGTATATTGGTTCT TGGAGAAATTGTGGAGCCAAACATCGTTTATACCCCACTTGTCCCATCACAGCCTCATTATAATTTGAATATGCAGAGCATTTCTGTCAATGGCCAAACT TTAGCCATTGATCCAACAGTTTTTGGAACATCAAGCAGCCAAGGAACTATAATTGATTCTGGAACAACCTTGGCATATCTAGCAGAAGCAGCTTATGATC CTTTTATTAGTGCTATAACATCTATTGTTTCACCATCTGTGCGCCCATATCTTTCCAAGGGAAATCACTGTTATTTAATTTCCTCCAGTATCAATGACAT ATTTCCTCAAGTGAGTTTGAACTTTGCTGGTGGTGCATCCATGATTTTAATTCCCCAGGACTACCTTATTCAGCAAAGTTCTATTGGTGGTGCTGCGTTG TGGTGCATTGGCTTTCAGAAAATTCAGGGTCAAGGGATAACAATCTTAGGAGATCTTGTTCTAAAAGACAAAATCTTTGTTTATGATATTGCTAATCAAC GGATTGGATGGGCTAATTATGACTGCTCAATGTCAGTAAATGTGTCTACTGCCATAGATACTGGCAAAAGCGAATTTGTCAATGCTGGGACACTGAGCAA TAACGGTTCACCAAAAAACATGCCTCACAAACTGACACCGGTGACTATGATGTCATTCCTTCTACATATGCTATTGCTCAGCTGTTACATGTTTTTGTAG
AA sequence Show only first row Show all	>Potri.009G001700.1 pacid=42770784 polypeptide=Potri.009G001700.1.p locus=Potri.009G001700 ID=Potri.009G001700.1.v4.1 annot-version=v4.1 MGAAPFPAGILIAAVVFHATVVLSSFPATFHLERGITANYKLKLSKLKERDRVRHGRMLQSSGVGVVDFPVQGTFDPFLVGLYYTRLQLGTPPRDFYVQI DTGSDVLWVSCGSCNGCPVNSGLHIPLNFFDPGSSPTASLISCSDQRCSLGLQSSDSVCSAQNNLCGYNFQYGDGSGTSGYYVSDLLHFDTVLGGSVMNN SSAPIVFGCSALQTGDLTKSDRAVDGIFGFGQQDMSVVSQLASQGISPRAFSHCLKGDDSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNMQSISVNGQT LAIDPTVFGTSSSQGTIIDSGTTLAYLAEAAYDPFISAITSIVSPSVRPYLSKGNHCYLISSSINDIFPQVSLNFAGGASMILIPQDYLIQQSSIGGAAL WCIGFQKIQGQGITILGDLVLKDKIFVYDIANQRIGWANYDCSMSVNVSTAIDTGKSEFVNAGTLSNNGSPKNMPHKLTPVTMMSFLLHMLLLSCYMFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22850			Eukaryotic aspartyl protease f...		Potri.009G001700 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.018G002300 [exp]	10.86	0.8231
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	15.16	0.8216
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	24.81	0.7885
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.008G180800 [exp]	29.41	0.8025
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.011G000900 [exp]	47.74	0.7885
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	53.24	0.7248
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	54.60	0.7847
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G176900 [exp]	55.74	0.7139
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130000 [exp]	60.39	0.7734
AT4G39690			unknown protein		Potri.007G087100 [exp]	68.66	0.7390

Compare expression of checked genes

Potri.009G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.