Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29860 523 / 0 EMB2757, TAN TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 70 / 9e-13 WD-40 repeat family protein / notchless protein, putative (.1) AT5G50120 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 55 / 4e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 54 / 1e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 51 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 48 / 7e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079600 [exp] 70 / 8e-13 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 61 / 2e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 62 / 3e-10 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G148500 [exp] 57 / 8e-09 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 54 / 1e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 54 / 1e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 54 / 1e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G157900 [exp] 52 / 6e-07 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.017G014700 [exp] 50 / 2e-06 AT4G28450 798 / 0.0 nucleotide binding;protein binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019636 [exp] 507 / 0 AT4G29860 477 / 4e-169 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10009335 [exp] 499 / 8e-178 AT4G29860 473 / 3e-167 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 62 / 3e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 62 / 5e-10 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 60 / 9e-10 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001301 [exp] 57 / 1e-08 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10041007 [exp] 54 / 1e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 54 / 1e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018458 [exp] 53 / 3e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 53 / 3e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G002100.1 pacid=42770934 polypeptide=Potri.009G002100.1.p locus=Potri.009G002100 ID=Potri.009G002100.1.v4.1 annot-version=v4.1 ATGAGCAAAAGGCCAGCACCTGATCCAGTTGCAGTCCTTAGAGGCCATCGCGCCTCTGTTATGGACGCTTCTTTCCATCCTTCTAAACCTTTGCTTTTCA CCGGTTCTACAGACGGAGAGTTACGGATTTGGGATACTGTACAGCATCGAACTGTATCATCTTCTCGGGTGCATAGTGCGGCTCATGGGATAATATCTGT GGCTGCGAGTCCTTTGATTGGTGACAACAAAGTTATCAGCCAGGGTAGGGATGGAACTGTAAAGTGCTGGGATATTGACAATGGTGGTTTGTCGAGGGAA CCTTCACTAACTATCAAAACAAACGCTTACCATTTTTGCAAGCTCTCTTTAGTGAAGAAGCCTAATTCTAGTGTGAGGCAAGGTGAAGGGCCAAATTATA AACATGAGAAGGATGATACAGAAACTGTTGATACCAATTCTCTGGGCAATAAAGGAATAAATTATGAAGAAGATCCAGTTGAGTGCTCCAACCCCCTTGA AGATTTGCATGCTGATGGATCAAAGTACATTGCTGTGGCAGGGGAGCAGTCTTCCGAGGTTGAGATATGGGATCTGAATACTGCAGAAAGGCTTGCACGA TTACCTCAAAGCTGCATTGGTGGTTCATCTAATATTTCTACTAACAAAAGAGGAATGTGCATGGCAGTTCAAGCATTTCTACCATCAGAATCACAGGGAT TTCTGTATATCTTGGTTGGTTATGAGGATGGTTCCATGCTTTTGTGGGATATGCGAAATCCAGGGGCTTTTGTAAATTCTGTTAAGTTCCATACAGAGCC AGTTCTAAGCCTATGCGTCGATGGGTTGTGCAGTGGGGGCATTTCAGGAGCCGCTGATGACAAAATTGCCCTATATAGTTTGGATGTTTCTGTGGGTTCT TGTGTGATGAAGAAAGAGATTAGCTTGGAACGACCTGGTGTATCAGGCACCTCAATTCGACCAGATAGCAAAATTGCTGCCACTGCTGGTTGGGACCACA GAGTCAGGATATATAACTATCGCAAAGGAAATGCTTTGGCTATACTGAAGTATCACCATGCTACGTGCAATGCAGTTACATATTCAACCGATTGCAAGTT AATGGCTTCTGCTTCAGAAGACACAACAATTGCATTGTGGGAACTGTATCCTCCCCAAACTTGA
AA sequence Show only first row Show all	>Potri.009G002100.1 pacid=42770934 polypeptide=Potri.009G002100.1.p locus=Potri.009G002100 ID=Potri.009G002100.1.v4.1 annot-version=v4.1 MSKRPAPDPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHSAAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSRE PSLTIKTNAYHFCKLSLVKKPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAVAGEQSSEVEIWDLNTAERLAR LPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILVGYEDGSMLLWDMRNPGAFVNSVKFHTEPVLSLCVDGLCSGGISGAADDKIALYSLDVSVGS CVMKKEISLERPGVSGTSIRPDSKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAVTYSTDCKLMASASEDTTIALWELYPPQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	1.00	0.8961
AT2G23890			HAD-superfamily hydrolase, sub...		Potri.018G100600 [exp]	3.46	0.8075
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	10.95	0.8156
AT1G79020			Enhancer of polycomb-like tran...		Potri.014G000600 [exp]	12.84	0.8184
AT1G72390			unknown protein		Potri.001G165800 [exp]	13.03	0.8429
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	15.58	0.7834
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.002G161500 [exp]	16.12	0.7903
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	17.49	0.8210
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	17.88	0.7714
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	18.97	0.8143

Compare expression of checked genes

Potri.009G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.